Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq164 179 5e-40 seq1073 111 2e-19 >seq164 Length=162670 Score = 179 bits (198), Expect = 5e-40 Identities = 1139/1809 (63%), Gaps = 61/1809 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || ||||| || ||| |||||||| | | ||||| || Sbjct 46611 CGCAGGTAGTACATTCCAGTCTTCAGACCCAGCTTCCAGCCCGCGAAGTGCATGCTGGTG 46552 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | ||| ||| || |||| | ||| | ||| || || ||||||||| Sbjct 46551 ATCTTGCCCATGGTCGGATCTTTCATGTGAATGTTGAGGGATTGAGACTGGTCGATGAAG 46492 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 || || || || ||||| | | || | || | || |||||||| ||| Sbjct 46491 GCGCCACGGTCGGCAGCCATCTGTACGACGG---TACGCTGGGAAATCTCCCACACCGTC 46435 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 |||| | | ||| | || | ||||| | ||| ||||| ||||| ||| | | Sbjct 46434 TTGTACAAGGCCTTGACCTCGGCAGGGATGTTGGGGATGTTTTGAATGGAGCCATTCTCA 46375 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACG 118133 | ||| | | |||||| | | ||||| || || |||| || |||| | Sbjct 46374 GCAATGATGCGGTTCTTCATGCCGTCGGACCACAGTCCCATCTCGACAAGGTCCTT---G 46318 Query 118134 AGATGCTT---ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTG 118190 ||| || |||||| || ||||| || ||||| ||| | | | ||||| ||| Sbjct 46317 AGAAGCCAGGGATTGACGACCTGGAACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTG 46258 Query 118191 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 118250 | ||||| || || |||||||| ||||| |||| || || | ||| || |||||| Sbjct 46257 GAGGTGTAAGGTTCGAAGCACTCGTTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGC 46198 Query 118251 ATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCG 118310 ||||| || | ||| || ||||| |||| || | | | | || | || || | || | Sbjct 46197 ATGGGGGCAACGAGCAGACTGTTGCGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAG 46138 Query 118311 TCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGG 118370 |||||||| || | | || | | |||||| || ||||||| || || | | Sbjct 46137 TCCCAGTCCCAGAGGTCAGAGGGCTTGACGTCCCACATGTCGTACTGGAGAATCCCCTTG 46078 Query 118371 GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTC 118430 || | || || || || | | || | ||| || ||| |||||| | | || | Sbjct 46077 GAAACAGGGGAGCCTTCGTACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGAC 46018 Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTG-GCCTC 118489 |||||| ||||| || || || || || || || | | || | || || Sbjct 46017 ATGGTGAGGGCGGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTGAG-GTCTCGAGCTTC 45959 Query 118490 GTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAG 118549 | || || || | | || || || |||| || || || ||||| ||||| Sbjct 45958 AGCAGACTCGAAGGGCATGCGCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAG 45899 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCT 118609 || || |||||||| | ||| || || || || || || || || || Sbjct 45898 ACCGATGGGGCGATGGCGCATGTTGCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGAC 45839 Query 118610 ATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTA 118669 || || | ||| || | || | |||||||| |||| || || | ||| | | | Sbjct 45838 GTCAATGATCCTGTTCAAGTTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAA 45779 Query 118670 ATCAAAACTGCGAGTCTCTTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAG 118723 ||| | ||| |||| ||| || | | || ||||| | || ||||| Sbjct 45778 GTCATAGGTGC------CTTCGTTGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAG 45725 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 || || || | |||||| | | |||||| || ||||| ||||| | ||| || Sbjct 45724 GTTGCAGACGGCAACCTCATCAGGCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGA 45665 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843 || ||||| || | |||||| || || ||| ||| || |||||||| || Sbjct 45664 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAG 45605 Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902 |||| | || | ||||||||||| || | || || || || | ||| | | || | Sbjct 45604 CATGAAGGGGTTGCCCGTCTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGC 45545 Query 118903 CTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAA 118959 || | ||| ||| | | ||||| ||||||||| ||| | || |||| Sbjct 45544 CTTGA----TGGTCTTGCGACCCTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAA 45489 Query 118960 ACTCTTCACCC--ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACC 119016 |||| || || || | || | ||| || || || | |||| || | ||||| || Sbjct 45488 ACTCCTCGCCGTAACAG--TCGGCGAGGCC-GGAGCACTCGTTGGGACACATGAGAGTCC 45432 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 | | ||| || ||| || | |||||||||||| || |||||||| || || ||| | Sbjct 45431 AGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAA 45372 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 |||| || || | || || | || || || || | || | || || | || Sbjct 45371 GATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCGAGGAACTCGAAGA 45312 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAG 119190 ||| |||||||| || || ||||| | |||| | || | | || ||| Sbjct 45311 CATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAGGCACC---AGGTCGCTTGTTACCGC 45255 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 | |||| ||||| | || ||| ||| || ||||| ||||| || | || ||| | || Sbjct 45254 CTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGCAGCATAGGGACGACACCGTTGG 45195 Query 119251 ATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCG-TGGATGTGCA 119307 | || || || ||| ||| || ||| | | ||| | || || |||| || | Sbjct 45194 AGGTTCCGTTGGTGCCCGCGATGTAGGAGCC--AGTGGAAC-GAATGCGATGGACGTTGA 45138 Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367 ||| || || || ||| ||| || || |||||| | |||| || ||||||| | Sbjct 45137 GACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCACGTCTTGAGGGTGTCGTAGATGC 45078 Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGT 119426 | ||||| ||||| |||| | ||| ||||||||| |||| ||| |||||| || Sbjct 45077 CTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGAAGACAGTTG-GGCCTGAGGG 45019 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGT 119484 || || |||||||| ||||| || | || ||| ||||| | |||| |||||| || Sbjct 45018 GTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC--AGCTTGCTCGACATCAAGT 44961 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 ||| ||||| | ||| || || || || ||| || | | ||| ||||||| Sbjct 44960 TGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCAAATGCCAACAGCGACACGCATAA 44901 Query 119545 ACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCA 119604 ||||| ||| || | || | | ||||||| | | ||||||| | |||||| Sbjct 44900 TCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCA 44841 Query 119605 AGGTCTTGA 119613 ||||||||| Sbjct 44840 AGGTCTTGA 44832 >seq1073 Length=8604 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| || || ||||| || |||||||||||||| |||||| ||| || Sbjct 2804 GGCAAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCC 2745 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| |||||||| | ||| || || | ||| | || ||||||||||| Sbjct 2744 AGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGAT 2685 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| ||| ||||| || | ||||||| ||| || Sbjct 2684 GCCCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 2646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425335958560