Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq164 197 2e-45 seq1073 131 2e-25 seq140 102 1e-16 >seq164 Length=162670 Score = 197 bits (218), Expect = 2e-45 Identities = 977/1526 (64%), Gaps = 47/1526 (3%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| | ||||| || || | || ||| || || || |||| || | |||| Sbjct 44895 ACATGATTATGCGTGTCGCTGTTGGCATTTGGGGTGACAACGTTGAGCGCGTTATCGAGA 44954 Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346 | ||| || |||||| |||| | ||||| || || | || || || ||||| || Sbjct 44955 CGTACAACTTGATGTCGAGCAAGCT--GTTCACCCATGCCTCGCCCACTCTGTTCAACGC 45012 Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 || || || ||||| |||| |||||||| ||| | ||||||||||| || Sbjct 45013 CGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGACTCCAT 45072 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTAT 104466 | | || ||||| | || || | | ||| || || || ||| |||||| || || Sbjct 45073 CGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCTGGAGGCAT 45132 Query 104467 TGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACAAATGGT 104524 || | || ||||| | | ||| | ||| || ||| ||| || || || Sbjct 45133 CGGTCTCAACGTCCATCGCATTCGTTCCACTGG--CTCCTACATCGCGGGCACCAACGGA 45190 Query 104525 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 104584 || | ||| | | || ||||| || || || ||| ||| || |||||||| | Sbjct 45191 ACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATGTCGAC 45250 Query 104585 CAAGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCACGCG 104638 |||| || | ||| || || |||| |||| |||||||| |||||||| Sbjct 45251 CAAGGCGG---TAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACGCC 45307 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGC 104698 ||| || | |||||||| || | || ||||| || | ||||||| || |||| Sbjct 45308 GATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGC 45367 Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| ||| ||| || ||||| || |||||||||||||||||||| ||| ||| || Sbjct 45368 GATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACGGT 45427 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAG-GCACCTGGTCTCTCCGATGCCGT--GGGTGAG 104815 | ||| ||||| | ||||| || || || || || ||| |||| | || || ||| Sbjct 45428 GACTGGACTCTCATGTGTCCCAACGAGTGCTCC-GGCCTCGCCGA--CTGTTACGGCGAG 45484 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGTGC 104873 |||||||| || | ||| ||||||||| || ||| || | | || ||| | | Sbjct 45485 GAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGG-GTC-GCAAGACCAT-C 45541 Query 104874 CAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || | || | ||||| | || || || || | || || ||||| || | || | | Sbjct 45542 AAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCCTTC 45601 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||||| ||||| |||||| |||| ||||| || || ||||| | ||| ||| Sbjct 45602 ATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGC 45661 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 || ||||| || || || |||||| | || | | | |||||| || || || Sbjct 45662 AGCTCCAACCTTTGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGC 45721 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 105110 ||||| || || | || || |||| | || || | | | || ||| || | ||| | Sbjct 45722 AACCTGGCTTCTCTGGCCCTGCCCACCTTCGTTGA-CTACA-ACGAAGGCACCTATGACT 45779 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || | ||||| || || | |||| | ||| | ||||| | ||||| Sbjct 45780 TCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATCATTGACG 45839 Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 || ||||| ||| || || ||||| || ||| | || || || || |||| Sbjct 45840 TCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCCATCGGTC 45899 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGAC 105289 |||| || ||||| || || |||| ||| || | || ||| | || || || | Sbjct 45900 TCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTG-CGCATGCCCTTCGAGTCTGCT 45958 Query 105290 GAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCG 105349 ||||| || |||| | || || |||||||| || |||||||| || | Sbjct 45959 GAAGCTCGAGACCTCAACAAGAAGATCTTCGAGACCATCTACCACGCCGCCCT--CACCA 46016 Query 105350 AGTTCAG--AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 || | | ||||||| ||| || || | || | | || || || || | || Sbjct 46017 TGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCCCCTGTTT 46076 Query 105408 CACAAGGGG-TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 105466 | ||||||| | || || | || |||||||| | || || | || |||||| Sbjct 46077 C-CAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTGGGACTGG 46135 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 || || | || || | |||||| || | || | || |||||||| ||| | || || Sbjct 46136 GACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGTTGCCCCC 46195 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 ||||| || || ||| | || || |||| || || || ||||| ||||| ||||| Sbjct 46196 ATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACCTTACACC 46255 Query 105587 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA---CAAGCAT 105643 | |||||||| | | | | ||||| || ||||| | | ||||| | || | Sbjct 46256 TCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTCCAGGTCGTCAATCCCTGGCTT 46315 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703 ||| | ||||| ||||| || || |||||| | | |||||| | | ||| | Sbjct 46316 CTC---AAGGACCTTGTCGAGATGGGACTGTGGTCCGACGGCATGAAGAACCGCATCATT 46372 Query 105704 AAAGCGGGTGGTTCCATTCAAAATAT 105729 | | ||| ||||||||||| || Sbjct 46373 GCTGAGAATGGCTCCATTCAAAACAT 46398 >seq1073 Length=8604 Score = 131 bits (144), Expect = 2e-25 Identities = 168/226 (74%), Gaps = 8/226 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA--CA-AAGTC 94790 |||||| || |||| ||||| || || ||||| | |||||| | | || ||||| Sbjct 2582 AGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCCCTCAAGTGGATCAACGACCAGAAGTC 2641 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || | ||| |||| || |||| || || ||||||||| ||||||||||| || Sbjct 2642 CACTTTC---GCTCAGCGTCTTGTCGCCTTCGCTGCTGTTGAGGGCATCTTCTTCTCCGG 2698 Query 94851 TTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | |||| |||| | || | ||||||||||||||| ||||||||||| || || ||||| Sbjct 2699 TGCCTT-TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCTGGCCTGACCTTCT 2757 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| || || |||||||| ||||| ||||| ||| || ||||| Sbjct 2758 CCAATGAACTCATCTCTCGCGACGAAGGACTGCACACCGATTTTGC 2803 >seq140 Length=148099 Score = 102 bits (112), Expect = 1e-16 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 |||||| |||||||||||||||| |||||| || || | |||||| | || || Sbjct 86013 GGCATCGATCTCATCAATGAAGATGATGCAAGGCGCGTTCTTGCGAGCAGTGGCGAACAG 85954 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAA 9820 || || || | || ||| ||||| || |||||||| || || | | | || || Sbjct 85953 GTCACGCACTCTGGAGGGGCCGACACCGACGAACATCTCGACGAACTCGGATCCGCTGAC 85894 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 | || |||||| || ||| || ||||| |||| ||| || || |||||||| Sbjct 85893 GCT--GAAGAAGGGAACGCCAGACTCGCCCGCCGTGGCCTTGGCAAGCAGCGTCTTACCA 85836 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||||| || || ||||||| |||||| || |||||||||||||| Sbjct 85835 GTACCCGGGGGTCCGGCGAGGATGGCACCGCGAGGAATCTTGGCGCC 85789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251496990240