Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq269 188 2e-42
seq245 149 2e-30
seq277 86.0 2e-11
>seq269
Length=282219
Score = 188 bits (208), Expect = 2e-42
Identities = 543/829 (66%), Gaps = 10/829 (1%)
Strand=Plus/Plus
Query 349493 ATTGAGGTTGAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550
||||||||||| | || || || |||| | | || ||||| || || || | |
Sbjct 186730 ATTGAGGTTGAGTTCAAGGGCGAGAACAAGACC--TTCACTCCCGAGGAGATCTCCGCCA 186787
Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610
||||| | || || ||| || | ||||| || || | |||| || ||| | |
Sbjct 186788 TGGTTCTCGTCAAGATGCGCGAGACCGCTGAGGCCTACCTTGGTGGCCAGGTCACTAACG 186847
Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670
|||| || ||||| || ||||| || || || |||||||| || || || ||||| |
Sbjct 186848 CTGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCCG 186907
Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730
| |||||| || | || || || | || || || || ||||| || || || ||||
Sbjct 186908 GTCTCATTGCCGGTCTGAACGTCCTTCGTATCATCAACGAGCCCACCGCCGCTGCCATTG 186967
Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790
| || || ||||| || | | ||| || || |||| ||||| || | ||||
Sbjct 186968 CCTACGGTCTTGACAAGAAGGCTGAGGGTGAGCGCAACGTTCTGATTTTCGACCTTGGTG 187027
Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850
||||||| || ||||| || || || || |||| ||||| || || || || || | |
Sbjct 187028 GTGGTACCTTCGATGTTTCCCTCCTGACGATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 187087
Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910
| |||||||| || || | ||||| || || || || || || ||||| || || |
Sbjct 187088 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCG 187147
Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969
| || || || ||||| ||||| || | || | || || | || |||||
Sbjct 187148 TCAACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCTCGTGCTCTGCGT 187206
Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCT 350029
||||| | ||||| || || ||||| ||||| || | || || || |||| |||||
Sbjct 187207 CGCCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 187266
Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089
||||| ||||| ||||| || || | || |||| | || || || ||||||||
Sbjct 187267 ATTGAGATTGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGC 187326
Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149
|| || || | || ||| || || | | || || | || || || || |
Sbjct 187327 TTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTTCTT 187386
Query 350150 AAAGATGCAAAAATGTCCAAAAAT--CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207
| ||||| || | || | || | ||| || | || | || | || |||||||| |
Sbjct 187387 ACTGATGCCAAGA--TCGATAAGTCCCAGGTTCACGAGATCGTCCTGGTCGGTGGTTCCA 187444
Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267
| ||||| || | || || | | || || | || || ||||| || || |
Sbjct 187445 CCCGTATCCCCCGCATCCAGAAGCTCATTTCCGACTACTTCAACGGCAAGGAGCCCAACA 187504
Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316
|| || || || ||||| |||||||| || ||||| |||||||||||
Sbjct 187505 AGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCTGTTCAGGC 187553
>seq245
Length=397273
Score = 149 bits (164), Expect = 2e-30
Identities = 174/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||| || || | | || || | || | ||||||||| || ||||| || |
Sbjct 356434 TTTGCATACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGT 356493
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
|||| || | || || ||||| |||||||||||||| || ||||| ||||| ||||| |
Sbjct 356494 AATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGT 356553
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| || || || |||||||| || | || || || || || | ||| || |
Sbjct 356554 CAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAG 356613
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | |||| ||||| ||||| || || || || |||||||||||
Sbjct 356614 ACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668
Score = 118 bits (130), Expect = 3e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || | || || || ||||| || || || || ||||| ||
Sbjct 356213 ACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGA 356272
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
|| || || ||||| || | || || ||||| ||||| ||||||||||| ||||||||
Sbjct 356273 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGG 356332
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688
||| || || || ||||| || || ||| || ||||| || || | || || | || |
Sbjct 356333 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCTGAAGACTCGA 356391
Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|||| | || | ||||| ||||| | || || || ||||| |||||
Sbjct 356392 CTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440
Score = 107 bits (118), Expect = 6e-18
Identities = 148/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || ||||| || || ||||| || || || ||
Sbjct 356666 CATACCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC 356725
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || ||||| ||||| || || ||||| || || || || ||||| || ||
Sbjct 356726 GCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGG 356785
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||| || || || || |||||||| || | || ||||| || || | ||| || | ||
Sbjct 356786 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTC 356845
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713
||| || || || | |||||||||||
Sbjct 356846 AACCTCGAGAGTGATGGTCTTTCCGGT 356872
>seq277
Length=172027
Score = 86.0 bits (94), Expect = 2e-11
Identities = 63/71 (89%), Gaps = 2/71 (3%)
Strand=Plus/Minus
Query 423772 ATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTG-GCGAAAGC-CTCGTGGGTT 423829
||| ||||||||||||||| | |||||||||| |||| || |||||||| | ||||||||
Sbjct 85980 ATGGCCGAGTGGTCTAAGGCGACAGACTTAAGTTCTGTTGTGCGAAAGCACGCGTGGGTT 85921
Query 423830 CAAACCCCACT 423840
|||||||||||
Sbjct 85920 CAAACCCCACT 85910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515229627484628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |