Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq269 188 2e-42 seq245 149 2e-30 seq277 86.0 2e-11 >seq269 Length=282219 Score = 188 bits (208), Expect = 2e-42 Identities = 543/829 (66%), Gaps = 10/829 (1%) Strand=Plus/Plus Query 349493 ATTGAGGTTGAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 ||||||||||| | || || || |||| | | || ||||| || || || | | Sbjct 186730 ATTGAGGTTGAGTTCAAGGGCGAGAACAAGACC--TTCACTCCCGAGGAGATCTCCGCCA 186787 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 ||||| | || || ||| || | ||||| || || | |||| || ||| | | Sbjct 186788 TGGTTCTCGTCAAGATGCGCGAGACCGCTGAGGCCTACCTTGGTGGCCAGGTCACTAACG 186847 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 |||| || ||||| || ||||| || || || |||||||| || || || ||||| | Sbjct 186848 CTGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGATGCCG 186907 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | |||||| || | || || || | || || || || ||||| || || || |||| Sbjct 186908 GTCTCATTGCCGGTCTGAACGTCCTTCGTATCATCAACGAGCCCACCGCCGCTGCCATTG 186967 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | || || ||||| || | | ||| || || |||| ||||| || | |||| Sbjct 186968 CCTACGGTCTTGACAAGAAGGCTGAGGGTGAGCGCAACGTTCTGATTTTCGACCTTGGTG 187027 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 ||||||| || ||||| || || || || |||| ||||| || || || || || | | Sbjct 187028 GTGGTACCTTCGATGTTTCCCTCCTGACGATTGAGGAGGGTATCTTCGAGGTCAAGTCCA 187087 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | |||||||| || || | ||||| || || || || || || ||||| || || | Sbjct 187088 CCGCTGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTCG 187147 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969 | || || || ||||| ||||| || | || | || || | || ||||| Sbjct 187148 TCAACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCTCGTGCTCTGCGT 187206 Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCT 350029 ||||| | ||||| || || ||||| ||||| || | || || || |||| ||||| Sbjct 187207 CGCCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCTGCCCAGACCTCC 187266 Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||| ||||| ||||| || || | || |||| | || || || |||||||| Sbjct 187267 ATTGAGATTGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATCACCCGTGCTCGC 187326 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | || ||| || || | | || || | || || || || | Sbjct 187327 TTCGAGGAGCTTTGCCAGGACCTGTTCCGCTCCACCATCCAGCCCGTCGACCGCGTTCTT 187386 Query 350150 AAAGATGCAAAAATGTCCAAAAAT--CAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| || | || | || | ||| || | || | || | || |||||||| | Sbjct 187387 ACTGATGCCAAGA--TCGATAAGTCCCAGGTTCACGAGATCGTCCTGGTCGGTGGTTCCA 187444 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | ||||| || | || || | | || || | || || ||||| || || | Sbjct 187445 CCCGTATCCCCCGCATCCAGAAGCTCATTTCCGACTACTTCAACGGCAAGGAGCCCAACA 187504 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 || || || || ||||| |||||||| || ||||| ||||||||||| Sbjct 187505 AGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCGCTGTTCAGGC 187553 >seq245 Length=397273 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | || || | || | ||||||||| || ||||| || | Sbjct 356434 TTTGCATACCTCCGCGGAGGCGGAGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGT 356493 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| |||||||||||||| || ||||| ||||| ||||| | Sbjct 356494 AATCGGAGAGCGTGCGACCATCCTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGT 356553 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| || || || |||||||| || | || || || || || | ||| || | Sbjct 356554 CAGGAGGAATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAG 356613 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||| ||||| ||||| || || || || ||||||||||| Sbjct 356614 ACTCGACCTCCAAAGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 Score = 118 bits (130), Expect = 3e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| || || || || ||||| || Sbjct 356213 ACCACCACGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGA 356272 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || ||||| || | || || ||||| ||||| ||||||||||| |||||||| Sbjct 356273 TAGGGTACGACCATCCTCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGG 356332 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAA 140688 ||| || || || ||||| || || ||| || ||||| || || | || || | || | Sbjct 356333 AATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTGTCTGAAGACTCGA 356391 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || | ||||| ||||| | || || || ||||| ||||| Sbjct 356392 CTTCCAAAGTGATCGTCTTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 Score = 107 bits (118), Expect = 6e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| || || ||||| || || || || Sbjct 356666 CATACCACCACGCAGACGAAGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTC 356725 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| ||||| || || ||||| || || || || ||||| || || Sbjct 356726 GCTGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGG 356785 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | ||| || | || Sbjct 356786 AGGGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTC 356845 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || || || | ||||||||||| Sbjct 356846 AACCTCGAGAGTGATGGTCTTTCCGGT 356872 >seq277 Length=172027 Score = 86.0 bits (94), Expect = 2e-11 Identities = 63/71 (89%), Gaps = 2/71 (3%) Strand=Plus/Minus Query 423772 ATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTG-GCGAAAGC-CTCGTGGGTT 423829 ||| ||||||||||||||| | |||||||||| |||| || |||||||| | |||||||| Sbjct 85980 ATGGCCGAGTGGTCTAAGGCGACAGACTTAAGTTCTGTTGTGCGAAAGCACGCGTGGGTT 85921 Query 423830 CAAACCCCACT 423840 ||||||||||| Sbjct 85920 CAAACCCCACT 85910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515229627484628