Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq164 271 8e-68 seq1073 141 1e-28 seq144 96.9 4e-15 >seq164 Length=162670 Score = 271 bits (300), Expect = 8e-68 Identities = 491/713 (69%), Gaps = 24/713 (3%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||||||| |||| ||| ||| ||| || || || ||| |||| || |||||| Sbjct 44951 GAGACGTACAACTTGATGTCGAGC---AAGCTGTTCACCCATGCCTCGCCCACTCTGTTC 45007 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| | || |||| |||||||| || | |||||||| ||| Sbjct 45008 AACGCCGGCACCCCTCAGGCCCAACTGTCTTCGTGCTTCCTCGTCGATATGAAGGAGGAC 45067 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || ||||| ||||||||||| || |||||| ||| ||| || |||||| | | || Sbjct 45068 TCCATCGAAGGCATCTACGACACCCTCAAGACGTGCGCCATGATTTCCAAGATGGCTGGA 45127 Query 53420 GGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 || |||||| || || | ||| | | ||| | | ||| | ||| ||| || | Sbjct 45128 GGCATCGGTCTCAACGTCCATCGCA--TTCGTTCCACTGGCTCCTACATCGCGGGCACCA 45185 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| | || | || |||| |||||||| || |||||||||||||| || || || | Sbjct 45186 ACGGAACCTCCAACGGTGTCGTCCCTATGCTGCGTGTCTTCAACAACACCGCTCGCTATG 45245 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||| || ||| ||||| || | |||||||||||||| ||||| ||||||| Sbjct 45246 TCGACCAAGGCGGTAACAAGCGACCTGGTGCCTTCGCCATCTACCTTGAGCCCTGGCACG 45305 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| | | ||||| ||||| || || ||| || || | || ||| | || || Sbjct 45306 CCGATGTCTTCGAGTTCCTCGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCC 45365 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 | || || || || || ||||| || || ||||||||| | | || |||||| ||| Sbjct 45366 GCGATCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGAGAGTCGAGAAGAACG 45425 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776 || ||| || ||||| || ||||||||| |||||||| | | ||| ||||| ||| Sbjct 45426 GTGACTGGACTCTCATGTGTCCCAACGAGTGCTCCGGCCTCGCCGACTGT-TACGGCGAG 45484 Query 53777 GAGTTTAACGAGATGTATCGGACGTA------CGCAGTTCAGGGCCGCTACAAGAAGAAG 53830 |||||| | | | |||| || ||| || | | |||| ||| |||| Sbjct 45485 GAGTTTGAGGCGTTGTACGAGAAGTACGAGCGCGAGGGTAAGGGTCGC------AAGACC 45538 Query 53831 GTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCG 53890 ||||||| | || | ||| | || ||||| || ||| ||||||||| | || Sbjct 45539 ATCAAGGCCCAGAAGCTGTGGTACGCCATCCTTGAGGCGCAGACGGAGACGGGCAACCCC 45598 Query 53891 TACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | |||| |||||||| | | |||| |||||||||||||||||| |||| Sbjct 45599 TTCATGCTGTACAAGGACGCCGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 45651 Score = 104 bits (114), Expect = 3e-17 Identities = 614/968 (63%), Gaps = 48/968 (5%) Strand=Plus/Plus Query 54977 TGCACTGAAATCGTCGAGGTTTCCGAGGCGGACGAGACGGCTGTATGCAATTTGGCATCT 55036 |||||||||||| ||||| || | | | || ||| || || ||||| |||| ||| Sbjct 45674 TGCACTGAAATCATCGAGTACTCGGCGCCTGATGAGGTTGCCGTCTGCAACCTGGCTTCT 45733 Query 55037 CTGTGCCTGCCGACGTTTCTGAAGTCCTTGAATCCTAATGGTGGCCATCCATTCTTATTT 55096 ||| |||||| || || | |||| | | || | ||| | ||| Sbjct 45734 CTGGCCCTGCCCACCTT--------CGTTGACTAC-AACGAAGGCA-------CCTAT-- 45775 Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||| | ||||| || || | ||||| || ||| ||||| || |||| Sbjct 45776 GACTTCCAGAAGTTGCACGAGGTCACCCAGGTTGTCGTCCGCAACTTGAACAGGATCATT 45835 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| || ||||||| | | | ||| || || |||| | || || || |||||| Sbjct 45836 GACGTCAACCACTACCCTGTTCAGGAGGCCCGTAACAGCAACATGCGCCATCGCCCCATC 45895 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTCG 55276 | |||| || |||||| | || || ||| | || | |||||||||| || Sbjct 45896 GGTCTCGGCGTCCAGGGCCTTGCTGATGCGTTCCTTGCCCTGCGCATGCCCTTCGAGTCT 45955 Query 55277 GAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGA 55335 | |||||||| | ||| || | |||||| || | ||||||| || || ||| Sbjct 45956 GCTGAAGCTCGAGACCTCAACAAGAAGATCTTCGAGAC-CATCTACCACGCCGCCCTCAC 46014 Query 55336 GGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGC 55395 ||| || || |||| | || || |||||| ||| | | || || | Sbjct 46015 CATGTCCTGCCAGTTGGCGCAGGAAGAAGGCACCTACTCCTCGTACGAAGGCTCCCCTGT 46074 Query 55396 TGACAAGGGACTTCTCCAGTTCGATCTATGGGGC---AAG---TCTGACCCCATG---TT 55446 | |||||| ||||||||| ||| | |||| | ||| ||||||| | | | Sbjct 46075 TTCCAAGGGGATTCTCCAGTACGACATGTGGGACGTCAAGCCCTCTGACCTCTGGGACTG 46134 Query 55447 TGACAAGTTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCC 55506 ||| ||||| | | || | | ||| | |||||| |||||||| || || Sbjct 46135 GGACTCTTTGAAAGAGCAGATCAAGCAGCACGGCGTCCGCAACAGTCTGCTCGTTGCCCC 46194 Query 55507 AATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACAC 55566 ||||| || || || | ||||| |||||||||||||| ||||| || ||||| Sbjct 46195 CATGCCCACTGCAAGCACTTCGCAGATTCTGGGCAACAACGAGTGCTTCGAACCTTACAC 46254 Query 55567 GACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCAC-- 55624 |||||||||||| |||||| || || || ||||| || | || ||| | | Sbjct 46255 CTCCAACATCTACCAGCGCCGCGTTCTCGCTGGCGAGTTC--CAGG-TCGTCAATCCCTG 46311 Query 55625 -CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG-ATCAAGA--CGGAT-A 55679 || |||||||||| |||| |||| || | | || |||| || || | Sbjct 46312 GCTTCTCAAGGACCTTGTCGAGATGGGACTGTGGT-CCGACGGCATGAAGAACCGCATCA 46370 Query 55680 TTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGATTCCT-CTGCGTCTCAAGGAG 55735 ||| ||| || ||| | || || | | || ||| | | | |||||| Sbjct 46371 TTGCTGAGAATGGC---TCCATTCAAAACATCCCCAACATCCCTGCCGAGG-TCAAGGCC 46426 Query 55736 ATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGT 55795 | ||| |||||||||||||||| | ||| | | | | ||| ||| || ||| Sbjct 46427 TTGTACAAGACGGTGTGGGAGATTTCCCAGCGTACCGTCGTACAGATGGCTGCCGACCGT 46486 Query 55796 GGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCC 55855 || || | |||||||||||| || || || ||||| |||| | |||| | ||| | Sbjct 46487 GGCGCCTTCATCGACCAGTCTCAATCCCTCAACATTCACATGAAAGATCCGACCATGGGC 46546 Query 55856 AAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTAT 55915 ||| | | | |||||||| || |||||| ||| || ||||| || |||||||| Sbjct 46547 AAGATCACCAGCATGCACTTCGCGGGCTGGAAGCTGGGTCTGAAGACTGGAATGTACTAC 46606 Query 55916 CTGCGGAC 55923 ||||| || Sbjct 46607 CTGCGTAC 46614 >seq1073 Length=8604 Score = 141 bits (156), Expect = 1e-28 Identities = 312/457 (68%), Gaps = 22/457 (5%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||| |||| ||||| ||||| ||||||||||| || | | |||||||||||||| Sbjct 3091 TAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATA 3032 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579 |||| || || || ||| ||| | ||| || | | || ||| || Sbjct 3031 AAGTCAAAGGGATTGCTTGACTTGTAGAC---CTTTTCATTGCCGAGGGTAACCAGCAGA 2975 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || |||||||||| |||||||||| |||| | || ||| |||| ||| | Sbjct 2974 CGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGACCG 2915 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || ||||| |||||||||| ||||| ||| | || | || | |||||| || Sbjct 2914 CAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCG---TCGACAATGATG 2858 Query 74700 T---GAATGTCTT---TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | | ||| | | || |||| | | ||||||| ||||| ||| | || ||| Sbjct 2857 TCCCGGATGACCTGCTTGCTGGGGCGGTGCT---TCAGGTGGGAGTAGAGCAGGCA-GGC 2802 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| ||||| || | || | |||||| || || | |||||||| Sbjct 2801 AAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGG 2742 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGG-CACAGAAGGAACCACTGAAGAAGATGC 74871 ||| || ||||||||||| | ||||||||||| | || |||| ||| ||||||||||| Sbjct 2741 CATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGCACCGGAGAAGAAGATGC 2683 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 | || ||| || ||||||||||| || || ||||| Sbjct 2682 CCTCAACAGCAGCGAAGGCGACAAGACGCTGAGCGAA 2646 >seq144 Length=420169 Score = 96.9 bits (106), Expect = 4e-15 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| || |||||||| |||||| |||||||| | |||||| | ||||| Sbjct 411981 AATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGACGGGAACCGAAGTTACCACT 411922 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 || || | | ||| | |||||||| || ||||| || || || | || || || Sbjct 411921 GGGTTCGAGGCAGTTGATGTTGTTGGAACCGACAAAATTCTGTGCGAGACCGATGATGGT 411862 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || ||| | ||||| ||||| || | || ||||| | || || || |||| Sbjct 411861 CTGCTGCAGGGAAACTTCACCGTGGTGGTAGGATGTTTGCTCGGAAACATAACCAGCCAA 411802 Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 | | |||||| || |||| || |||||| ||| || || || ||||| || Sbjct 411801 TTCAATGACCTTCTGATCCTTGGTCAAATTTCTCTTGAAGCAAGCGTACATGACCTTACG 411742 Query 117550 CTGACTTGGCTTCAGACCATC 117570 ||||| |||||| || || || Sbjct 411741 CTGACCTGGCTTGAGGCCGTC 411721 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | ||||| ||||| |||||| || || || | || || | ||| | Sbjct 411980 ATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGACGGGAACCGAAGTTACCACTG 411921 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 || |||||| ||||| |||||||| || || |||||||| || | | | || || Sbjct 411920 GGTTCGAGGCAGTTGATGTTGTTGGAACCGACAAAATTCTGTGCGAGACCGATGATGGTC 411861 Query 152155 CCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAAC 152214 |||||| ||||||||||||| || | || ||||| | | || || ||||| Sbjct 411860 TGCTGCAGGGAAACTTCACCGTGGTGGTAGGATGTTTGCTCGGAAACATAACCAGCCAAT 411801 Query 152215 TGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGC 152274 | |||||| ||| | |||| || |||||| || ||||| || ||||| ||| Sbjct 411800 TCAATGACCTTCTGATCCTTGGTCAAATTTCTCTTGAAGCAAGCGTACATGACCTTACGC 411741 Query 152275 TGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 || ||| || | ||||| | ||| ||||| || ||| || |||| Sbjct 411740 TGACCTGGCTTGAGGCCGTCAATCACAGATGGAATAGATCGCATGTTGTC 411691 Score = 82.4 bits (90), Expect = 8e-11 Identities = 94/125 (75%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 119066 AATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACG 119125 |||| | |||||| |||||| |||||||||||||| ||||| ||||| ||| ||| Sbjct 410102 AATTGCTCACTGAAAACGTTGCAAAGCTTGGCACCGTAACCGTTACGACCGCCG---ACG 410046 Query 119126 CGC---TGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCG 119182 | | ||| ||||||| ||||||||| | ||| | | ||| |||||||| | ||| Sbjct 410045 GTCTTTTTCTCGTCGTCGTCGTAGTTGGAACCGGTAAGCAAGTGACCAAAGATCATCTCC 409986 Query 119183 GGGAT 119187 ||||| Sbjct 409985 GGGAT 409981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207271904800