Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq164 306 4e-78
seq245 181 1e-40
seq63 149 7e-31
seq663 118 1e-21
seq144 113 5e-20
>seq164
Length=162670
Score = 306 bits (338), Expect = 4e-78
Identities = 972/1495 (65%), Gaps = 73/1495 (5%)
Strand=Plus/Minus
Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415
||||| || ||||| ||| ||| | || | ||| | |||||||| || || ||||
Sbjct 46293 AACTCGCCAGCGAGAACGCGGCGCTGGTAGATGTTGGAGGTGTAAGGTTCGAAGCACTCG 46234
Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475
||||| || || ||||| | ||||| || || ||||| ||| | || | ||| ||
Sbjct 46233 TTGTTGCCCAGAATCTGCGAAGTGCTTGCAGTGGGCATGGGGGCAACGAGCAGACTGTTG 46174
Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAA---TCTGA---CCAAAAATCAACCCCA 80529
|| | |||||||| |||||| | ||| |||| || | ||| | ||| |
Sbjct 46173 CGGACGCCGTGCTGCTTGATCTGCTCTTTCAAAGAGTCCCAGTCCCAGAGGTCAG----A 46118
Query 80530 ACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587
||| |||| |||||||||||| ||| | || |||| || | || || || ||
Sbjct 46117 GGGCT-TGACGTCCCACATGTCGTACTGGAGAATCCCCTTGGAAACAGGGGAGCCTTCGT 46059
Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGAT 80647
||| ||| | ||| || || |||| || || ||| | ||||| ||||| |
Sbjct 46058 ACGAGGAGTAGGTGCCTTCTTCCTGCGCCAACTGGCAGGACATGGTGAGGGCGGCGTGGT 45999
Query 80648 AAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGC 80707
| ||| ||| |||| |||||| | | || || | | ||||| | || ||
Sbjct 45998 AGATGGTCTCGAAGATCTTCTTGTTGAGGTCTCGAGCTTCAGCAGACTCGAAGGGCATGC 45939
Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767
|| | |||| | ||||| |||||||| ||||||| |||| ||||| ||||||
Sbjct 45938 GCAGGGCAAGGAACGCATCAGCAAGGCCCTGGACGCCGAGACCGATGGGGCGATGGCGCA 45879
Query 80768 TGTTCGATCGCTCGG-CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGG 80826
|||| | | ||| ||||| ||| ||||| ||| || |||| | ||||| |
Sbjct 45878 TGTT-GCTGTTACGGGCCTCCTGAACAGGGTAGTGGTTGACGTCAATGATCCTGTTCAAG 45820
Query 80827 TTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCC--CCT 80884
||||| |||||| | || || || || | ||||| ||||| || ||| || | |
Sbjct 45819 TTGCGGACGACAACCTGGGTGACCTCGTGCAACTTCTGGAAGTC--ATAGGTGCCTTCGT 45762
Query 80885 TC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG 80938
| || || | || ||| ||| || ||||| ||||| ||||| ||||| ||||
Sbjct 45761 TGTAGTCAACGAAGGTGGGCAGGGCCAGAGAAGCCAGGTTGCAGACGGCAACCTCATCAG 45702
Query 80939 CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTT 80998
| | |||||| |||||| ||||| | || || || ||||| ||||| |
Sbjct 45701 GCGCCGAGTACTCGATGATTTCAGTGCAAAGGTTGGAGCTGCGGATGGTACCGAGGTTCT 45642
Query 80999 TCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGA 81058
||||||| |||| |||| ||||||||||| |||| | ||| | || |||||
Sbjct 45641 TCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGTCTCCG 45582
Query 81059 CCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGC 81118
||| | || |||||||||| ||| | || | ||||||| |||||| || |
Sbjct 45581 TCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTAC 45522
Query 81119 CTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178
| ||| | | ||||| |||| | || |||| | |||| | || | ||||
Sbjct 45521 CCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTAACAGTCGGCGAGGC 45462
Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238
| | ||||||||| || ||||| || |||||| || ||||| || ||||||||
Sbjct 45461 CGGAGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGA 45402
Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298
| ||||||||||| |||||| ||| || |||||| || ||||||| | || |
Sbjct 45401 AGAGATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGT 45342
Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358
|||| ||| | ||||| || || | || || || ||||| ||||| || || | ||
Sbjct 45341 GGTTCTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGG 45282
Query 81359 CGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412
||| | || | |||| | || || |||| ||| || || || || ||| |
Sbjct 45281 CGAAGGCACCAGGTCGCTTGTTA---CCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGA 45225
Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472
| ||||||| |||||||| || ||| | || ||||| || ||| |||| || |
Sbjct 45224 AGACACGCAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGC 45165
Query 81473 CCTTGGCGCGCACCTTGCTGATTGA----AAGACCGATGCCACCTGACCACTTTGAAATC 81528
| ||| || | ||| ||| || ||||||||||| || | | ||| ||||||
Sbjct 45164 CAGTGGAACGAA---TGC-GATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATC 45109
Query 81529 TGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTC---- 81584
|| ||| || | ||| || || || || |||||| || | ||||| ||
Sbjct 45108 ATGGCGCACGTCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACG 45049
Query 81585 ---AAGCAAGAA-ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTG 81640
||||| ||| |||| | | | ||||||| | |||||| |||||||| || |
Sbjct 45048 AGGAAGCACGAAGACAGTTGGGC--CTGAGGG------GTGCCGGCGTTGAACAGAGTGG 44997
Query 81641 GGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAA 81700
| | || || |||| | | ||||||| || || || || | ||||| ||
Sbjct 44996 GCGAGGCATGGGTGAACAGCTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAA 44937
Query 81701 TATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG---- 81756
| |||||| ||| || | ||| |||||||||| ||||| || ||| |||||
Sbjct 44936 CGTTGTCACCCCAAATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAA 44877
Query 81757 -CCTGCGTTC----------AGGTACATCTTCTGCAAAGTCTTGATGCCGAAGTA 81800
| ||| || |||||| | ||| ||| ||||||| |||||||||
Sbjct 44876 TCTTGCCATCGATCTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTA 44822
>seq245
Length=397273
Score = 181 bits (200), Expect = 1e-40
Identities = 164/204 (80%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||| ||||| || ||||| ||||||||||| |||| ||| | ||| | ||| |
Sbjct 356872 ACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGTCC 356813
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| || ||||| ||||||||||| || ||||| ||||| |||
Sbjct 356812 AAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 356753
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
|| || ||||||| ||| ||||| ||| ||||| || ||||||||||||||||||| ||
Sbjct 356752 CAGCTTGAGGATGGTCGCACCCTCAGC-GACTACAACATCCAAAAGGAATCCACTCTCCA 356694
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | ||||| || |||||
Sbjct 356693 CCTCGTCCTTCGTCTGCGTGGTGG 356670
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| | ||||||||||| || ||| | || || |||||
Sbjct 356440 ATGCAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCA 356381
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| ||||| || || |||||||||||||| |||||||| ||||||
Sbjct 356380 GACACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 356321
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || ||||| ||||| | ||||||| |||||||||| | || || ||
Sbjct 356320 CAACGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAAC 356261
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || || || || | || | ||||| || ||||| ||
Sbjct 356260 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGTGGTGGTCA 356211
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || ||||||||||| |||||| | ||||| |||||
Sbjct 356668 ATGCAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCG 356609
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || ||||||||||||||||| |||||||| ||||||
Sbjct 356608 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 356549
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || || ||||| ||||||| ||| || || | || || ||
Sbjct 356548 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAAC 356489
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || ||| | || | || | || || ||||| ||
Sbjct 356488 ATTCAGAAGGAGTCTACTTTGCACTTGGTGCTCCGCCTCCGCGGAGG 356442
>seq63
Length=145700
Score = 149 bits (164), Expect = 7e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || || || |||||||| || |||||||| |||||
Sbjct 39370 ATCATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 39429
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 39430 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 39489
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| | || || || || ||||| || ||||| | || ||||| | |||||
Sbjct 39490 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTAC 39549
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || || |||| || || |||||
Sbjct 39550 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 39599
>seq663
Length=189090
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| || ||||| || || || ||||| ||||| || ||||||||||| || | ||
Sbjct 17420 CTTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGAT 17479
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || |||||||||||||| || || || ||||||||||| |
Sbjct 17480 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 17539
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||||||||| || ||||| | || ||||| | ||||| || |||| ||
Sbjct 17540 GATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 17599
Query 27594 GGAAT 27598
|| ||
Sbjct 17600 GGTAT 17604
>seq144
Length=420169
Score = 113 bits (124), Expect = 5e-20
Identities = 196/285 (69%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018
|| ||| || |||||| ||| |||||||||||||| ||||| ||||| || ||
Sbjct 411696 CATGCGATCTATTCCATCTGTGATTGACGGCCTCAAGCCAGGTCAGCGTAAGGTCATGTA 411755
Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078
||| ||| |||||| || || | | || |||||| | || | || || ||
Sbjct 411756 CGCTTGCTTCAAGAGAAATTTGACCAAGGATCAGAAGGTCATTGAATTGGCTGGTTATGT 411815
Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138
| |||||||| |||| |||||||| || | || || ||| ||||| || ||
Sbjct 411816 TTCCGAGCAAACATCCTACCACCACGGTGAAGTTTCCCTGCAGCAGACCATCATCGGTCT 411875
Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198
|| ||||| ||||||||| | || ||| | |||| ||||| || ||| | || ||
Sbjct 411876 CGCACAGAATTTTGTCGGTTCCAACAACATCAACTGCCTCGAACCCAGTGGTAACTTCGG 411935
Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
|||| || ||||||||| |||||||| || | ||||||||
Sbjct 411936 TTCCCGTCTTGCCGGTGGCTCTGATGCTGCCAGTCCTCGTTACAT 411980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570301303549120
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