Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq410 104 2e-17
>seq410
Length=292899
Score = 104 bits (114), Expect = 2e-17
Identities = 190/274 (69%), Gaps = 6/274 (2%)
Strand=Plus/Plus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTC 34385
||||| ||||||| |||| || || || ||||| |||| ||| |||||| | |
Sbjct 35439 AAGATTTGGGACGGAAACGGCTCGCGCGAGTTTCTTGACAGTGTCGGCCTTTCCCACCGC 35498
Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445
| | | ||||| | ||||| || ||||| ||||| ||| | ||||| || || ||||
Sbjct 35499 G--AAGTCGGCGATCTCGGCCCCGTGTACGGCTTCCAATGGCGGCACTTCGGCGCCGAGT 35556
Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504
| || | || ||| |||||||| |||| ||||| | ||||| ||| | || ||
Sbjct 35557 A-CGTCGACGCCAAGACGGACTATACGGGCCAGGGCGTCGACCAACTGGCCGAGGTCATT 35615
Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564
| | | ||| |||||| | ||| | ||||| || || ||||||||||||| |
Sbjct 35616 CAAAAACTCAAGACGAACCCGTACGACCGCCGGATCCTGCTGAGCGCGTGGAACCCCGCG 35675
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
|| || |||||||||||| || |||||||
Sbjct 35676 GACCTGAAGAAGATGGCGCTCCCGCCCTGCCACA 35709
Score = 104 bits (114), Expect = 2e-17
Identities = 190/274 (69%), Gaps = 6/274 (2%)
Strand=Plus/Minus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
||||||| || |||||||||||| || ||| ||||||||||||| || || ||
Sbjct 35709 TGTGGCAGGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTCAGCAGGA 35650
Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866
||| | ||| | |||||| ||| | | | || || | ||| ||||| | |
Sbjct 35649 TCCGGCGGTCGTACGGGTTCGTCTTGAGTTTTTGAATGACCTCGGCCAGTTGGTCGACGC 35590
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
|||| |||| |||||||| ||| || | || ||||| || || ||||| | ||| |||
Sbjct 35589 CCTGGCCCGTATAGTCCGTCTTGGCGTCGACG-TACTCGGCGCCGAAGTGCCGCCATTGG 35531
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG--CTTGTCCA 6983
|| ||||| || ||||| | ||||| | | || | |||||| ||| |||| |
Sbjct 35530 AAGCCGTACACGGGGCCGAGATCGCCGACTT--CGCGGTGGGAAAGGCCGACACTGTCAA 35473
Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
|||| || || || |||| ||||||| |||||
Sbjct 35472 GAAACTCGCGCGAGCCGTTTCCGTCCCAAATCTT 35439
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448255250214720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |