Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq410 104 2e-17 >seq410 Length=292899 Score = 104 bits (114), Expect = 2e-17 Identities = 190/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Plus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAG--CGGGGGTTCCCATCTC 34385 ||||| ||||||| |||| || || || ||||| |||| ||| |||||| | | Sbjct 35439 AAGATTTGGGACGGAAACGGCTCGCGCGAGTTTCTTGACAGTGTCGGCCTTTCCCACCGC 35498 Query 34386 GGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGT 34445 | | | ||||| | ||||| || ||||| ||||| ||| | ||||| || || |||| Sbjct 35499 G--AAGTCGGCGATCTCGGCCCCGTGTACGGCTTCCAATGGCGGCACTTCGGCGCCGAGT 35556 Query 34446 ATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATC 34504 | || | || ||| |||||||| |||| ||||| | ||||| ||| | || || Sbjct 35557 A-CGTCGACGCCAAGACGGACTATACGGGCCAGGGCGTCGACCAACTGGCCGAGGTCATT 35615 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 | | | ||| |||||| | ||| | ||||| || || ||||||||||||| | Sbjct 35616 CAAAAACTCAAGACGAACCCGTACGACCGCCGGATCCTGCTGAGCGCGTGGAACCCCGCG 35675 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 || || |||||||||||| || ||||||| Sbjct 35676 GACCTGAAGAAGATGGCGCTCCCGCCCTGCCACA 35709 Score = 104 bits (114), Expect = 2e-17 Identities = 190/274 (69%), Gaps = 6/274 (2%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 ||||||| || |||||||||||| || ||| ||||||||||||| || || || Sbjct 35709 TGTGGCAGGGCGGGAGCGCCATCTTCTTCAGGTCCGCGGGGTTCCACGCGCTCAGCAGGA 35650 Query 6807 TCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTC 6866 ||| | ||| | |||||| ||| | | | || || | ||| ||||| | | Sbjct 35649 TCCGGCGGTCGTACGGGTTCGTCTTGAGTTTTTGAATGACCTCGGCCAGTTGGTCGACGC 35590 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 |||| |||| |||||||| ||| || | || ||||| || || ||||| | ||| ||| Sbjct 35589 CCTGGCCCGTATAGTCCGTCTTGGCGTCGACG-TACTCGGCGCCGAAGTGCCGCCATTGG 35531 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCG--CTTGTCCA 6983 || ||||| || ||||| | ||||| | | || | |||||| ||| |||| | Sbjct 35530 AAGCCGTACACGGGGCCGAGATCGCCGACTT--CGCGGTGGGAAAGGCCGACACTGTCAA 35473 Query 6984 GAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 |||| || || || |||| ||||||| ||||| Sbjct 35472 GAAACTCGCGCGAGCCGTTTCCGTCCCAAATCTT 35439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255250214720