Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq245 167 5e-36
seq63 158 3e-33
seq663 125 2e-23
seq164 93.3 1e-13
>seq245
Length=397273
Score = 167 bits (184), Expect = 5e-36
Identities = 164/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || || ||||| || |||||||| ||||| | ||||| | |||||
Sbjct 356229 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCC 356288
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| ||||||||| ||||||||||| ||||| ||||||||||||| || |||||||||
Sbjct 356289 TCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 356348
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || ||||||||||| || || || || | ||||||||||
Sbjct 356349 TGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTC 356408
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | |||||
Sbjct 356409 TTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440
Score = 163 bits (180), Expect = 7e-35
Identities = 150/190 (79%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| |||||||| || ||||||||||| || || ||||| | |||||
Sbjct 356685 AGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 356744
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || ||||| || ||||| ||||| | || |||||||||
Sbjct 356745 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 356804
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || |||||||| || ||| ||||||||||||||||| |||
Sbjct 356805 TGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTC 356864
Query 211083 TTTCCCGTGA 211092
||||| ||||
Sbjct 356865 TTTCCGGTGA 356874
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| | ||| ||||| || || ||||| ||||| | || || | |||||
Sbjct 356457 AGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCC 356516
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || |||||||| || || || ||||||||||||| || |||||||||
Sbjct 356517 TCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 356576
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| |||||||| || || || ||||| | ||| || |||
Sbjct 356577 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTC 356636
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || || | ||||||
Sbjct 356637 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668
>seq63
Length=145700
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || | ||||| | || ||
Sbjct 39584 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 39525
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| |||||||| | ||| || ||||| || || | || |||||||||
Sbjct 39524 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 39465
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 39464 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 39405
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || || | ||||||
Sbjct 39404 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373
>seq663
Length=189090
Score = 125 bits (138), Expect = 2e-23
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | ||||| | || || || |||||||| || ||||||||
Sbjct 17599 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 17540
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||| || ||||| || || | || ||||||||||||||||| || || || |||
Sbjct 17539 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 17480
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| ||||||||||| || || ||||| ||||| || ||||| || ||
Sbjct 17479 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 17421
>seq164
Length=162670
Score = 93.3 bits (102), Expect = 1e-13
Identities = 190/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152
|||||| ||||||||||| | | ||| || |||||| |||||||| | |||
Sbjct 45646 GTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGT 45587
Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212
||| | || ||| | || ||| | ||| |||| |||||| || ||||| |
Sbjct 45586 CTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGACC 45527
Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA-TCAT 178271
|| || || ||||||||| | ||| | | |||| || ||| || || ||| ||
Sbjct 45526 CTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTA-ACAGTCGG 45468
Query 178272 CGAGACCGGGAGC-CTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330
|||| |||| ||| ||| ||||| || | |||| |||| | ||||| | || ||||
Sbjct 45467 CGAGGCCGG-AGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 45409
Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
||||||||||| |||| | |||| | ||| |||||
Sbjct 45408 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAA 45372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159133049313740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |