Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq245 167 5e-36 seq63 158 3e-33 seq663 125 2e-23 seq164 93.3 1e-13 >seq245 Length=397273 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| ||||| | ||||| | ||||| Sbjct 356229 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCC 356288 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||||||||| ||||| ||||||||||||| || ||||||||| Sbjct 356289 TCCAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 356348 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||| || || || || | |||||||||| Sbjct 356349 TGGATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTC 356408 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | ||||| Sbjct 356409 TTGCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440 Score = 163 bits (180), Expect = 7e-35 Identities = 150/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| |||||||| || ||||||||||| || || ||||| | ||||| Sbjct 356685 AGGACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCC 356744 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| ||||| | || ||||||||| Sbjct 356745 TCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 356804 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || |||||||| || ||| ||||||||||||||||| ||| Sbjct 356805 TGAATCTTGGACTTGACATTGTCGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTC 356864 Query 211083 TTTCCCGTGA 211092 ||||| |||| Sbjct 356865 TTTCCGGTGA 356874 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| ||||| || || ||||| ||||| | || || | ||||| Sbjct 356457 AGCACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCC 356516 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || |||||||| || || || ||||||||||||| || ||||||||| Sbjct 356517 TCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCC 356576 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||| || || || ||||| | ||| || ||| Sbjct 356577 TGAATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTC 356636 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 356637 TTGCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668 >seq63 Length=145700 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 39584 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 39525 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 39524 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 39465 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 39464 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 39405 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 39404 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 39373 >seq663 Length=189090 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | || || || |||||||| || |||||||| Sbjct 17599 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGATC 17540 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | || ||||||||||||||||| || || || ||| Sbjct 17539 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 17480 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| ||||||||||| || || ||||| ||||| || ||||| || || Sbjct 17479 ATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAACGAA 17421 >seq164 Length=162670 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | ||| || |||||| |||||||| | ||| Sbjct 45646 GTTCTTCTGGTTGCTCTTGCGGTTGGCGGCGTCCTTGTACAGCATGAAGGGGTTGCCCGT 45587 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | || ||| | || ||| | ||| |||| |||||| || ||||| | Sbjct 45586 CTCCGTCTGCGCCTCAAGGATGGCGTACCACAGCTTCTGGGCCTTGATGGTCTTGCGACC 45527 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA-TCAT 178271 || || || ||||||||| | ||| | | |||| || ||| || || ||| || Sbjct 45526 CTTACCCTCGCGCTCGTACTTCTCGTACAACGCCTCAAACTCCTCGCCGTA-ACAGTCGG 45468 Query 178272 CGAGACCGGGAGC-CTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGT 178330 |||| |||| ||| ||| ||||| || | |||| |||| | ||||| | || |||| Sbjct 45467 CGAGGCCGG-AGCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTC 45409 Query 178331 TTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 ||||||||||| |||| | |||| | ||| ||||| Sbjct 45408 TTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAA 45372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159133049313740