Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq410 102 7e-17 >seq410 Length=292899 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 ||||||| ||||||||| | ||| | ||| | | |||||| ||||||||||| || || Sbjct 35990 GGGAAAGTCTCTGGGCTCGCGCTCCAACTGCACCTTCAGCGCGTCCACGTGGTCGAGATA 35931 Query 29671 GACGTGAGCATCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 ||||| || || |||| | ||| | || || ||| || || || || | | Sbjct 35930 CACGTGCGCGTCGCCCATGACGTGTGTCAGGCT-TCCTGGAATAAGGTCGCACGCGCGCG 35872 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | ||||| | ||||| || | ||| ||||| ||||| || ||||| || || ||||||| Sbjct 35871 CAATCATATGGGTGAGCAGCGCGTAACTGGCAATGTTGAATGGCACTCCCAGGCCCATGT 35812 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCA 29814 | | || | |||||| |||||||| Sbjct 35811 CACAGGAGCGCTGGTACAGCTGGCA 35787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406156883654536