Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq410 102 7e-17
>seq410
Length=292899
Score = 102 bits (112), Expect = 7e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670
||||||| ||||||||| | ||| | ||| | | |||||| ||||||||||| || ||
Sbjct 35990 GGGAAAGTCTCTGGGCTCGCGCTCCAACTGCACCTTCAGCGCGTCCACGTGGTCGAGATA 35931
Query 29671 GACGTGAGCATCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
||||| || || |||| | ||| | || || ||| || || || || | |
Sbjct 35930 CACGTGCGCGTCGCCCATGACGTGTGTCAGGCT-TCCTGGAATAAGGTCGCACGCGCGCG 35872
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
| ||||| | ||||| || | ||| ||||| ||||| || ||||| || || |||||||
Sbjct 35871 CAATCATATGGGTGAGCAGCGCGTAACTGGCAATGTTGAATGGCACTCCCAGGCCCATGT 35812
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCA 29814
| | || | |||||| ||||||||
Sbjct 35811 CACAGGAGCGCTGGTACAGCTGGCA 35787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406156883654536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |