Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq164 118 1e-21 >seq164 Length=162670 Score = 118 bits (130), Expect = 1e-21 Identities = 315/479 (66%), Gaps = 2/479 (0%) Strand=Plus/Minus Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAG 78019 ||| || || || ||||| | | ||||||||| | | || |||| ||||| ||||| Sbjct 45457 GCACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAG 45398 Query 78020 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATT 78079 |||||| ||||| || || | || ||||| |||| | || || || || || Sbjct 45397 ATCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTT 45338 Query 78080 CTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCAT 78139 ||| ||||||||| ||||| | | ||| | ||||| || || || || || || | Sbjct 45337 CTTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAA 45278 Query 78140 AACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCT 78199 | |||||||| || ||||| || || || | ||| | |||||||| || | || | Sbjct 45277 GGCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACG 45218 Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 || ||| || | | |||||| || ||||| || || || | || || ||| | | Sbjct 45217 CAGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGA 45158 Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 ||||| | | | | || || ||||| |||||||| || || | |||| ||| Sbjct 45157 ACGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGC-ACG 45099 Query 78320 T-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGC 78378 | || | || |||||||| || || || ||| ||| |||| | | || || || Sbjct 45098 TCTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACG 45039 Query 78379 TAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||| ||| ||| || || || || || | || || || ||||| || ||| Sbjct 45038 AAGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAAC 44980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657720032640