Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1073 105 1e-17
seq164 100 4e-16
>seq1073
Length=8604
Score = 105 bits (116), Expect = 1e-17
Identities = 291/444 (66%), Gaps = 8/444 (2%)
Strand=Plus/Minus
Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398
|| ||||| || | ||||| ||||| || || || || ||||| | | || || ||
Sbjct 3097 TTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 3038
Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458
|||||||| ||||| ||||| | || || | |||| | || | | |
Sbjct 3037 TCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGC 2978
Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518
|| | || || || ||||| || ||| ||||| | | ||||||| || | |||
Sbjct 2977 AGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGA 2918
Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578
| || |||||||| || || ||||| || ||||| |||| || || || | |
Sbjct 2917 CCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTC-GACAAT--- 2862
Query 46579 GATGTTACTGTTTCCTCACTTGGTGGA----TGCATCAAATGTTTAAACATTAAACATGC 46634
||||| | | | | |||| ||| ||| ||| || | | | || ||
Sbjct 2861 GATGTCCCGGATGACCTGCTTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGC 2802
Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694
|||||| || || ||||| || | | || | ||| || || || || || |||||
Sbjct 2801 AAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGG 2742
Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754
||| || |||||||| ||||||||||| || | ||| || | || || ||||| |||||
Sbjct 2741 CATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGATGCC 2682
Query 46755 TTCTACAGCCGCGAATGCGACAAG 46778
|| ||||| ||||| ||||||||
Sbjct 2681 CTCAACAGCAGCGAAGGCGACAAG 2658
>seq164
Length=162670
Score = 100 bits (110), Expect = 4e-16
Identities = 431/678 (64%), Gaps = 14/678 (2%)
Strand=Plus/Minus
Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGA 76615
|| || || |||||||| | | ||| ||||| | | || || | ||||| ||||||
Sbjct 45456 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 45397
Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675
||||| ||||| || || | || ||||| |||| | || || || || |||
Sbjct 45396 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 45337
Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735
|| |||||| |||||||| | | ||| | ||||| || || || || || || |
Sbjct 45336 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 45277
Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795
|||| ||||| || ||||| || || || | ||| | || ||||| || | || | |
Sbjct 45276 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 45217
Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855
| ||| || | | ||||| || || || || || || | || || ||| | |
Sbjct 45216 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 45157
Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915
||||| | | || || || ||||| ||||| || || || | || || |||
Sbjct 45156 CGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGT 45098
Query 76916 -TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
|| | ||||| |||||||| || || || ||| |||| | | || || ||
Sbjct 45097 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 45038
Query 76975 AGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034
||||| ||| ||| || || || || |||| || || || ||||| ||||||
Sbjct 45037 AGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG 44978
Query 77035 TTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCT-----TCTATATCCCATTGATG 77088
|| || | | ||||| || || ||||| ||| | | ||||
Sbjct 44977 CTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------ 44924
Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTAT 77148
||| || |||||||||||||| | ||| || || || | || || |||| || ||
Sbjct 44923 AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGAT 44864
Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208
|| | | ||| || | ||||| || || || || || || | ||| ||||| |
Sbjct 44863 CTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACG 44804
Query 77209 TTCGTAAATAATAACCGA 77226
||||| | ||| ||||
Sbjct 44803 GTCGTAGACAATCGCCGA 44786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712923028696320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |