Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1073 105 1e-17 seq164 100 4e-16 >seq1073 Length=8604 Score = 105 bits (116), Expect = 1e-17 Identities = 291/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || ||||| || | ||||| ||||| || || || || ||||| | | || || || Sbjct 3097 TTCTGGTAATCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 3038 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 |||||||| ||||| ||||| | || || | |||| | || | | | Sbjct 3037 TCCATAAAGTCAAAGGGATTGCTTGACTTGTAGACCTTTTCATTGCCGAGGGTAACCAGC 2978 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || | || || || ||||| || ||| ||||| | | ||||||| || | ||| Sbjct 2977 AGACGGTCGGCCACAAATTCAATGTACTGCTTCATGAGGTTGGAATTCATCCCGAGGAGA 2918 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || |||||||| || || ||||| || ||||| |||| || || || | | Sbjct 2917 CCGCAGGGCAGAGCCTCGGTGAGGAACTCCTGCTCAATCTTGACGGCGTC-GACAAT--- 2862 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGA----TGCATCAAATGTTTAAACATTAAACATGC 46634 ||||| | | | | |||| ||| ||| ||| || | | | || || Sbjct 2861 GATGTCCCGGATGACCTGCTTGCTGGGGCGGTGCTTCAGGTGGGAGTAGAGCAGGCAGGC 2802 Query 46635 AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGG 46694 |||||| || || ||||| || | | || | ||| || || || || || ||||| Sbjct 2801 AAAATCGGTGTGCAGTCCTTCGTCGCGAGAGATGAGTTCATTGGAGAAGGTCAGGCCAGG 2742 Query 46695 CATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCC 46754 ||| || |||||||| ||||||||||| || | ||| || | || || ||||| ||||| Sbjct 2741 CATGAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGCACCGGAGAAGAAGATGCC 2682 Query 46755 TTCTACAGCCGCGAATGCGACAAG 46778 || ||||| ||||| |||||||| Sbjct 2681 CTCAACAGCAGCGAAGGCGACAAG 2658 >seq164 Length=162670 Score = 100 bits (110), Expect = 4e-16 Identities = 431/678 (64%), Gaps = 14/678 (2%) Strand=Plus/Minus Query 76556 CATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGA 76615 || || || |||||||| | | ||| ||||| | | || || | ||||| |||||| Sbjct 45456 CACTCGTTGGGACACATGAGAGTCCAGTCACCGTTCTTCTCGACTCTCTTCATGAAGAGA 45397 Query 76616 TCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTC 76675 ||||| ||||| || || | || ||||| |||| | || || || || ||| Sbjct 45396 TCAGGGATCCAAAGGGCGAGGAAAAGATCGCGGGCACGGACCTCCTCCTTGCCGTGGTTC 45337 Query 76676 TTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATA 76735 || |||||| |||||||| | | ||| | ||||| || || || || || || | Sbjct 45336 TTGCGAAGATCGAGGAACTCGAAGACATCGGCGTGCCAGGGCTCAAGGTAGATGGCGAAG 45277 Query 76736 ACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTC 76795 |||| ||||| || ||||| || || || | ||| | || ||||| || | || | | Sbjct 45276 GCACCAGGTCGCTTGTTACCGCCTTGGTCGACATAGCGAGCGGTGTTGTTGAAGACACGC 45217 Query 76796 AACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCA 76855 | ||| || | | ||||| || || || || || || | || || ||| | | Sbjct 45216 AGCATAGGGACGACACCGTTGGAGGTTCCGTTGGTGCCCGCGATGTAGGAGCCAGTGGAA 45157 Query 76856 CGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGT 76915 ||||| | | || || || ||||| ||||| || || || | || || ||| Sbjct 45156 CGAATGCGATGGACGTTGAGACCGATGCCTCCAGCCATCTTGGAAATCATGGCGCA-CGT 45098 Query 76916 -TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || | ||||| |||||||| || || || ||| |||| | | || || || Sbjct 45097 CTTGAGGGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATATCGACGAGGAAGCACGA 45038 Query 76975 AGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 ||||| ||| ||| || || || || |||| || || || ||||| |||||| Sbjct 45037 AGACAGTTGGGCCTGAGGGGTGCCGGCGTTGAACAGAGTGGGCGAGGCATGGGTGAACAG 44978 Query 77035 TTTTTCAGAAAGTAGATTGTATGTTTCAATAAC-TGCT-----TCTATATCCCATTGATG 77088 || || | | ||||| || || ||||| ||| | | |||| Sbjct 44977 CTTGCTCGACATCAAGTTGTACGTCTCGATAACGCGCTCAACGTTGTCACCCCA------ 44924 Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTAT 77148 ||| || |||||||||||||| | ||| || || || | || || |||| || || Sbjct 44923 AATGCCAACAGCGACACGCATAATCATGTGTTGCGGCCTCTCGGCAATCTTGCCATCGAT 44864 Query 77149 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 77208 || | | ||| || | ||||| || || || || || || | ||| ||||| | Sbjct 44863 CTTGAGGAGGTACGACCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACG 44804 Query 77209 TTCGTAAATAATAACCGA 77226 ||||| | ||| |||| Sbjct 44803 GTCGTAGACAATCGCCGA 44786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923028696320