Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201
7-02-04] 1,276 sequences; 99,166,722 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq63 161 7e-35
seq245 118 8e-22
seq663 114 9e-21
>seq63
Length=145700
Score = 161 bits (178), Expect = 7e-35
Identities = 176/232 (76%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||||
Sbjct 39599 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 39540
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| |||| || |||||||| ||||| |||||||| |||||||| || | ||
Sbjct 39539 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 39480
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288
| || ||||| ||| ||||| ||| || ||| | |||||||||| || ||||
Sbjct 39479 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 39422
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340
|||| | || || ||||| |||||||||||||| |||||||| ||||||||
Sbjct 39421 CCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 39370
>seq245
Length=397273
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| ||||| |||||| |||||||||||||||| || || | || ||
Sbjct 356231 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGATAGGGTACGACCATCCTC 356290
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || ||||| | ||| ||||| || | ||| | || ||||| |||
Sbjct 356291 CAACTGCTTGCCAGCGAAGATAAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 356350
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| | | |||||||| | || || || |||| || ||||||||
Sbjct 356351 GATCTTGCTCTTCACATTGTCGATGGTGTCTGAAGACTCGACTTCCAAAGTGATCGTCTT 356410
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | |||||| ||||| ||||||||
Sbjct 356411 GCCGGTCAAGGTCTTGACGAAAATTTGCAT 356440
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| ||| | || |||||| || ||||||||||||| ||| ||| | || ||
Sbjct 356459 CACCAAGTGCAAAGTAGACTCCTTCTGAATGTTGTAATCGGAGAGCGTGCGACCATCCTC 356518
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || ||||| ||||| | ||||||||| || | ||| | ||| ||||| |||
Sbjct 356519 AAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 356578
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||| | | | ||||| || | || || ||||||| ||||| |||||
Sbjct 356579 AATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCCAAAGTAATGGTCTT 356638
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| ||||| || |||||
Sbjct 356639 GCCGGTCAGAGTCTTGACGAAAATCTGCAT 356668
Score = 102 bits (112), Expect = 6e-17
Identities = 137/189 (72%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || ||| ||||||||||||||||| ||| ||| ||| | || ||
Sbjct 356688 ACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGACCATCCTCA 356747
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || || || |||| |||||||| || | ||| | ||| ||||| |||
Sbjct 356748 AGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGA 356807
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| |||| ||| || ||||| | || || ||||
Sbjct 356808 ATCTTGGACTTGACATTGT--CGATGGTATCGGAGGACTCAACCTCGAGAGTGATGGTCT 356865
Query 44307 TTCCCGTGA 44315
|||| ||||
Sbjct 356866 TTCCGGTGA 356874
>seq663
Length=189090
Score = 114 bits (126), Expect = 9e-21
Identities = 137/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||| ||||||||||| |||| ||| ||| |||| || |||||||| || || ||||
Sbjct 17601 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAGA 17542
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
|||| |||||||| || | || | || ||||| ||| ||||| ||| || |||
Sbjct 17541 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 17482
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || ||||| | ||| || ||||| | ||||| ||||| ||||| |||||||| ||
Sbjct 17481 --CGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTAAC 17424
Query 44326 GAAG 44329
||||
Sbjct 17423 GAAG 17420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359984801699292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |