Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20lindemuthianum_20[genbank_20GCA_5F001693025.2_20201 7-02-04] 1,276 sequences; 99,166,722 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq245 136 1e-26 seq63 132 1e-25 seq663 111 4e-19 >seq245 Length=397273 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || |||||||| | || || || |||||| Sbjct 356437 CAAATTTTCGTCAAGACCTTGACCGGCAAGACGATCACTTTGGAAGTCGAGTCTTCAGAC 356378 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || || ||||| ||||||||| Sbjct 356377 ACCATCGACAATGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAA 356318 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||| | || ||||| | || || ||||||| ||| || Sbjct 356317 CGTCTTATCTTCGCTGGCAAGCAGTTGGAGGATGGTCGTACCCTATCCGATTACAACATC 356258 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 356257 CAGAAGGAGTCGACGCTGCA-CTTG 356234 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || || || | ||||| || || || Sbjct 356665 CAGATTTTCGTCAAGACTCTGACCGGCAAGACCATTACTTTGGAGGTCGAGTCTTCGGAT 356606 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || ||||| |||||||| Sbjct 356605 ACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 356546 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||||||||| || || ||||| | || || ||||||| ||| | Sbjct 356545 CGTCTCATCTTCGCCGGAAAACAACTTGAGGATGGTCGCACGCTCTCCGATTACAACATT 356486 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || |||| |||| Sbjct 356485 CAGAAGGAGTCTACTTTGCA-CTTG 356462 Score = 134 bits (148), Expect = 3e-26 Identities = 142/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || ||||| |||||||| || ||| || |||||||| || ||||| Sbjct 356874 TCACCGGAAAGACCATCACTCTCGAGGTTGAGTCCTCCGATACCATCGACAATGTCAAGT 356815 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || || |||||||| |||||||| || || || ||||| || | Sbjct 356814 CCAAGATTCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCA 356755 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| || ||||| | || || ||| || ||| ||||||| ||||| || || | Sbjct 356754 AGCAGCTTGAGGATGGTCGCACCCTCAGCGACTACAACATCCAAAAGGAATCCACTCTCC 356695 Query 178123 ATCTTGT 178129 | || || Sbjct 356694 ACCTCGT 356688 >seq63 Length=145700 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 39376 CAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 39435 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 39436 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 39495 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| || || || | || || |||| || ||| || Sbjct 39496 CGCTTGATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTGTCCGACTACAACATC 39555 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 39556 CAGAAGGAGTCCACCCTCCACCTGGT 39581 >seq663 Length=189090 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || || ||||||||||| || ||| ||||| ||| Sbjct 17421 TTCGTTAAGACCCTGACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCGGACACGATC 17480 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || || ||||| || |||||||| || | Sbjct 17481 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 17540 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || ||||| || || || | || || |||| || ||| |||| || Sbjct 17541 ATCTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 17599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203711520499544