Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq179 123 5e-23 >seq179 Length=397792 Score = 123 bits (136), Expect = 5e-23 Identities = 315/471 (67%), Gaps = 10/471 (2%) Strand=Plus/Plus Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 ||| || ||| ||||||| || |||| | |||||| ||||| | || ||| Sbjct 380809 ATCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGC 380868 Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 ||| | |||| || ||||| ||| ||| | |||||||| || | || || Sbjct 380869 GTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAA 380928 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAA 230348 |||| ||||| |||||||||||| || || | || | | || |||| || | Sbjct 380929 CGAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCA 380988 Query 230349 GCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGA 230405 ||| || || | ||| | || ||| | | | |||||| || || || | Sbjct 380989 CCTCAAGCACCGCC--CCAA-CAAGCAGGTTATTGAGGACATCATTGTCGATGCGGTCAA 381045 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464 | || |||||||| | ||| ||| | || || ||| || | ||||||||| | Sbjct 381046 GATTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTG-CGCTCTCCTCGGCATGAACTCC- 381103 Query 230465 AACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523 ||||| ||| |||||||| || ||||| || ||||| | || || || ||||| || Sbjct 381104 AACTTGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAAC 381163 Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583 || || || ||||| ||| |||||||| | || |||||| |||||| || || Sbjct 381164 GACAAGGTCTACAAGTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGA 381223 Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634 ||||||||||||||||| |||||||| ||||| |||| | |||||||| Sbjct 381224 AAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCTGGTGTG 381274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057819649368230