Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq179 123 5e-23
>seq179
Length=397792
Score = 123 bits (136), Expect = 5e-23
Identities = 315/471 (67%), Gaps = 10/471 (2%)
Strand=Plus/Plus
Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228
||| || ||| ||||||| || |||| | |||||| ||||| | || |||
Sbjct 380809 ATCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGC 380868
Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288
||| | |||| || ||||| ||| ||| | |||||||| || | || ||
Sbjct 380869 GTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAA 380928
Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAA 230348
|||| ||||| |||||||||||| || || | || | | || |||| || |
Sbjct 380929 CGAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCA 380988
Query 230349 GCTCCAGAACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGA 230405
||| || || | ||| | || ||| | | | |||||| || || || |
Sbjct 380989 CCTCAAGCACCGCC--CCAA-CAAGCAGGTTATTGAGGACATCATTGTCGATGCGGTCAA 381045
Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTG 230464
| || |||||||| | ||| ||| | || || ||| || | ||||||||| |
Sbjct 381046 GATTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTG-CGCTCTCCTCGGCATGAACTCC- 381103
Query 230465 AACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523
||||| ||| |||||||| || ||||| || ||||| | || || || ||||| ||
Sbjct 381104 AACTTGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAAC 381163
Query 230524 GAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGG 230583
|| || || ||||| ||| |||||||| | || |||||| |||||| || ||
Sbjct 381164 GACAAGGTCTACAAGTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGA 381223
Query 230584 AAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTG 230634
||||||||||||||||| |||||||| ||||| |||| | ||||||||
Sbjct 381224 AAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCTGGTGTG 381274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057819649368230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |