Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq179 96.9 4e-15 >seq179 Length=397792 Score = 96.9 bits (106), Expect = 4e-15 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || ||||||||||| ||| | || ||||| ||||||||||| ||||| Sbjct 380653 ATGTAGGTGTCGATGAGTAGCGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGG 380594 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || || | || || || || || ||| || || | || Sbjct 380593 AAACCGTAGAAGCAACGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCAACGAGG 380534 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || || || |||||||||||| |||||||| || || | || || ||||| || Sbjct 380533 TTCTCATTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGTAC 380474 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || || | | |||||| | | ||| ||||| | ||| | || Sbjct 380473 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 380414 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 |||| |||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 380413 TCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 380367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543523348280