Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq190 154 2e-32 >seq190 Length=394142 Score = 154 bits (170), Expect = 2e-32 Identities = 356/544 (65%), Gaps = 53/544 (10%) Strand=Plus/Plus Query 145671 CAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTG 145730 |||||| | ||| || | || ||||||| ||||||||| ||||| |||| |||||| Sbjct 350907 CAGCTGCACCTTGAGCGCGTCTACGTGGTCCGCGTAGACGTGTGCGTCGCCCATGACGTG 350966 Query 145731 GATGAAG-TCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGT 145789 | | | | |||||| ||||| | | | | |||| ||||| ||||| || | || Sbjct 350967 CGTCAGGCTTCCCGGGA-CGAGGTCGCAGGCGCGCGCGATCATGTGCGTCAGGAGCGCGT 351025 Query 145790 AGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGC 145849 ||||||| |||||||| ||||| || || |||||||| | || |||||||| | |||| Sbjct 351026 AGCTGGCAATGTTGAAAGGCACGCCGAGTCCCATGTCGCAGGACCGCTGGTATATTTGGC 351085 Query 145850 AGGAGAGCTCCCC--------------------------GCCCGCC-------------- 145869 || || | ||| || |||| Sbjct 351086 AGTGTAGGTGCCCCTTTGGCTTCTGCTCCTCGTTTGCGGGCGCGCCGCGGGCTCGCGGGT 351145 Query 145870 -----ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCG 145924 ||||||||||| | | ||||||||||| |||||||| ||||| | Sbjct 351146 AAGAGACGTAGAACTGTGCGAACATATGGCAGGGCGGGAGGGCCATCTTCTTTAGGTCTG 351205 Query 145925 CCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCC 145981 |||||||||| ||| |||||| || | | || ||| |||||| |||||| || Sbjct 351206 CCGGGTTCCACGCGCTGAGGATGA---TGCGGCGGTCGTATGGGTTCGTCTTGAGCTTGT 351262 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGT 146041 || | || || ||||| ||||| || || ||| | |||||||||||||||| Sbjct 351263 GGATAACCTCGGCCAGTTGGTCGACGCCTTGGCCAGTATAAACCGTCTTGGAGTCCACGT 351322 Query 146042 ACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCC 146101 || |||| || ||||| | ||| ||||| || || ||||| || || || ||| || | Sbjct 351323 ACTCGGCGCCAAAGTGGCGCCATTGGAAGCCATATACGGGGCCGAGATCACCGACTTCAC 351382 Query 146102 TGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGA 146161 ||| || || | | | ||||||| || || || || || ||||||||||||||| Sbjct 351383 GGTGGGAAAGGCCAACGCTGTCGAGGAATTCGCGCGATCCATTACCGTCCCAGATCTTGA 351442 Query 146162 CGCC 146165 |||| Sbjct 351443 CGCC 351446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590074432316840