Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq179 174 2e-38
seq57 140 3e-28
seq6 118 1e-21
seq259 111 2e-19
>seq179
Length=397792
Score = 174 bits (192), Expect = 2e-38
Identities = 212/286 (74%), Gaps = 5/286 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| ||||||| | || |||
Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | || |||| | ||| | ||||||
Sbjct 380427 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 380485
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| |||||||| ||||||||||||||| ||||| || || |||||
Sbjct 380486 CCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGAGCG 380545
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||||| ||| | ||||||| || ||||||||||| || |||||| ||
Sbjct 380546 CTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 380605
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
||||||| | ||||| || | || ||| ||||||||||| |||
Sbjct 380606 GGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTAC 380651
Score = 150 bits (166), Expect = 2e-31
Identities = 300/439 (68%), Gaps = 4/439 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGC 117040
|||||||||| ||||| || |||||| || | ||||| | |||||| | ||||
Sbjct 380766 AGAAGGCCGACTGGGCCTTGAAATGGATCAGCGAC-GAGAGCTCATCCTTCGCCCAGCGT 380824
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
||||| |||||||| || || ||||| ||||||| || |||||| |||| ||
Sbjct 380825 CTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTC 380884
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || |||||||| || ||||| ||| ||||||||||||||| |
Sbjct 380885 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGC 380944
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|||||||| ||||| ||||||||||| | ||| | || | ||| || ||
Sbjct 380945 GACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCACCTCAAGCACCGCCCC 381004
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
| | | | | ||| ||| | ||| |||||| || |||||| ||| |
Sbjct 381005 AACAAGCAGGTTATTGAGGACATCATTGTCGATGCGGTCAAGATTGAGCAGGAGTTCTTG 381064
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
|| || || ||||| |||| ||| || || | || | | | |||| ||| |||||
Sbjct 381065 ACTGAGGCTCTGCC-TTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACAT 381123
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
|||||||| || ||| | || || ||| || | | || |||| |||||| | |
Sbjct 381124 TGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTC 381183
Query 117400 CAACCCGCTGGACTTTATG 117418
|||||| | || || |||
Sbjct 381184 CAACCCCTTCGATTTCATG 381202
>seq57
Length=484889
Score = 140 bits (154), Expect = 3e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || |||||||| || |||||| | || || || | ||
Sbjct 315699 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 315758
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | || || |||||||||||| | ||||||
Sbjct 315759 GACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 315818
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| ||||||||| |||||||||
Sbjct 315819 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAAC 315878
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| || || || || ||||| || | || ||
Sbjct 315879 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 315925
>seq6
Length=179136
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || || ||||| | || ||||| | ||
Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || |||| | ||| || |||| ||||| ||||||||||| | |||||
Sbjct 30902 GACACGATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 30960
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || ||||| | ||| ||||| || |||| |||| |||||| | | ||| |||||
Sbjct 30961 GCAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGCGATTACAA 31020
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| |||||||| | ||||| || || || | |||||| | || |||
Sbjct 31021 CATTCAGAAGGAATCTACGCTTCACCTTGTCCTCCGCTTGCGTGGTGGC 31069
Score = 109 bits (120), Expect = 6e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| ||||||||| | || || || | | || | | |
Sbjct 30396 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 30455
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | | ||| || |||| ||||| |||||||| ||| | |||||||| || || |
Sbjct 30456 ACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTA 30515
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| ||||| || || || |||| ||||| || |||||||||||| |||||||
Sbjct 30516 TCTTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGG 30575
Query 40880 AGGCCACGCTGCA 40892
|| | ||||| ||
Sbjct 30576 AGTCTACGCTCCA 30588
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || ||||| || || || |||| |||||| | |
Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||||||||| | ||||||
Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| || || || ||||| || || | |||||||| || || |||
Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||||||| | || |||||||| ||
Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGT 30822
>seq259
Length=323629
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 46239 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 46298
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||| ||| ||||||| || || |
Sbjct 46299 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTTG 46358
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || |||| ||||||||| ||| |||||||||||||||
Sbjct 46359 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGATTACAACATCCAGAAG 46418
Query 40879 G 40879
|
Sbjct 46419 G 46419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217132682960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |