Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq179 174 2e-38 seq57 140 3e-28 seq6 118 1e-21 seq259 111 2e-19 >seq179 Length=397792 Score = 174 bits (192), Expect = 2e-38 Identities = 212/286 (74%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| ||||||| | || ||| Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | || |||| | ||| | |||||| Sbjct 380427 TCCAAGGATCTCCA-CGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTC 380485 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| |||||||| ||||||||||||||| ||||| || || ||||| Sbjct 380486 CCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGAGCG 380545 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||||| ||| | ||||||| || ||||||||||| || |||||| || Sbjct 380546 CTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 380605 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || ||| ||||||||||| ||| Sbjct 380606 GGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTAC 380651 Score = 150 bits (166), Expect = 2e-31 Identities = 300/439 (68%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGC 117040 |||||||||| ||||| || |||||| || | ||||| | |||||| | |||| Sbjct 380766 AGAAGGCCGACTGGGCCTTGAAATGGATCAGCGAC-GAGAGCTCATCCTTCGCCCAGCGT 380824 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| |||||||| || || ||||| ||||||| || |||||| |||| || Sbjct 380825 CTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTC 380884 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || |||||||| || ||||| ||| ||||||||||||||| | Sbjct 380885 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGC 380944 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 |||||||| ||||| ||||||||||| | ||| | || | ||| || || Sbjct 380945 GACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCACCTCAAGCACCGCCCC 381004 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 | | | | | ||| ||| | ||| |||||| || |||||| ||| | Sbjct 381005 AACAAGCAGGTTATTGAGGACATCATTGTCGATGCGGTCAAGATTGAGCAGGAGTTCTTG 381064 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 || || || ||||| |||| ||| || || | || | | | |||| ||| ||||| Sbjct 381065 ACTGAGGCTCTGCC-TTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACAT 381123 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| || ||| | || || ||| || | | || |||| |||||| | | Sbjct 381124 TGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTC 381183 Query 117400 CAACCCGCTGGACTTTATG 117418 |||||| | || || ||| Sbjct 381184 CAACCCCTTCGATTTCATG 381202 >seq57 Length=484889 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || |||||| | || || || | || Sbjct 315699 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 315758 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | || || |||||||||||| | |||||| Sbjct 315759 GACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 315818 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| ||||||||| ||||||||| Sbjct 315819 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAAC 315878 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || || || || ||||| || | || || Sbjct 315879 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 315925 >seq6 Length=179136 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || ||||| | || Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | ||| || |||| ||||| ||||||||||| | ||||| Sbjct 30902 GACACGATTGACAACG-TGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 30960 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | ||| ||||| || |||| |||| |||||| | | ||| ||||| Sbjct 30961 GCAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGCGATTACAA 31020 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| |||||||| | ||||| || || || | |||||| | || ||| Sbjct 31021 CATTCAGAAGGAATCTACGCTTCACCTTGTCCTCCGCTTGCGTGGTGGC 31069 Score = 109 bits (120), Expect = 6e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| ||||||||| | || || || | | || | | | Sbjct 30396 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 30455 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | | ||| || |||| ||||| |||||||| ||| | |||||||| || || | Sbjct 30456 ACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTA 30515 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| ||| ||||| || || || |||| ||||| || |||||||||||| ||||||| Sbjct 30516 TCTTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGG 30575 Query 40880 AGGCCACGCTGCA 40892 || | ||||| || Sbjct 30576 AGTCTACGCTCCA 30588 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || || || |||| |||||| | | Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||||||||| | |||||| Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || ||||| || || | |||||||| || || ||| Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || |||||||| || Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGT 30822 >seq259 Length=323629 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| | || ||||| || | |||| | Sbjct 46239 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 46298 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || || | Sbjct 46299 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTTG 46358 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || |||| ||||||||| ||| ||||||||||||||| Sbjct 46359 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGATTACAACATCCAGAAG 46418 Query 40879 G 40879 | Sbjct 46419 G 46419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217132682960