Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq6 120 2e-22
seq57 116 2e-21
>seq6
Length=179136
Score = 120 bits (132), Expect = 2e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTC 34236
|| || ||||| | ||| ||| ||||| |||||||| ||| || | || ||| ||||
Sbjct 31053 AGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTG-CGGCCGTC 30995
Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296
||||| |||||||| ||||||||||| ||||||||||| || | || |||||||||
Sbjct 30994 TTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 30935
Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
||||| ||| | | | | |||| |||| || ||||| || | |||||| ||
Sbjct 30934 CTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGT 30875
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| ||||| | || || || |||||||||||
Sbjct 30874 CTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||| || || | || |||| ||| | ||| || ||||| |||||||||||||||
Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || |||| || | |||||||| ||||| || || ||||||||||| |||
Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | ||| | || || ||
Sbjct 30492 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACC 30433
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
|| | |||||||| ||||||||||| || || ||
Sbjct 30432 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 30398
Score = 100 bits (110), Expect = 2e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||| ||| | ||| || ||||| || ||||||||||| || ||| ||||
Sbjct 30313 AGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCC 30254
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||||||||| ||||| || || ||||| ||||| ||| | || ||||||||
Sbjct 30253 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCC 30194
Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357
||||| ||| | | | | || | ||||| |||||||| || | ||||||||
Sbjct 30193 TGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTC 30134
Query 34358 TTGCCGGTGA 34367
||||||||||
Sbjct 30133 TTGCCGGTGA 30124
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| ||||| || | || || || || | ||| || ||||| ||||| || || |||
Sbjct 30840 CCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGAC 30781
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| || | || || | |||||| || || || || | |||||||||||| ||
Sbjct 30780 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 30721
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | || | ||||||||
Sbjct 30720 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACC 30661
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||| || || ||||| || ||||| || || ||||| |||||
Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
>seq57
Length=484889
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | ||| |||||||| | || || ||||| ||||||||||| ||
Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | |||||| || ||||| || || |||||||||||| |||
Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || |||||| || ||||| ||| | || | | || | |||| ||| || ||
Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 315746
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| || || || || || |||||||||||
Sbjct 315745 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070736081760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |