Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq234 96.9 7e-15 seq49 93.3 9e-14 seq272 84.2 5e-11 >seq234 Length=379894 Score = 96.9 bits (106), Expect = 7e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| ||||| ||||| |||||||| || || || || || ||||| ||| | | | Sbjct 310111 TCTACGGGCCTCCGGGAACCGGCAAGACCTCGACGATTCTTGCTCTGGCTCGACGCATCT 310170 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 ||| | ||||||| | || || ||||| || ||||| || ||||| ||||| Sbjct 310171 ACGGCACCGAGAACATGCGGCAGATGGTCCTCGAACTCAACGCCTCAGACGATCGCGGAA 310230 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | |||||||||||||| |||||||||| || Sbjct 310231 TCGACGTCGTCCGCGAGCAGATCAAGACCTT 310261 >seq49 Length=112291 Score = 93.3 bits (102), Expect = 9e-14 Identities = 213/316 (67%), Gaps = 16/316 (5%) Strand=Plus/Minus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||| | ||||| || ||||||| | Sbjct 51453 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCCTGGAGAGA 51394 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || || ||||| | || |||||||| | || || ||||||||| | ||||| Sbjct 51393 TCATACCTACTCAAGCTCGACGGCAAGATTGCCGAGAGACCGCAGCACATGATCATGCGT 51334 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967 || || ||||| || | || ||||| | ||| |||| ||||||| |||| | Sbjct 51333 GTTGCAGTCGGCAT---CTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACAACTTG 51277 Query 248968 ATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTC 249024 ||| || | || | || || ||| | || || |||||||||||||||||| | Sbjct 51276 ATGTCCAGCAAGTTCT---TCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACC--C 51222 Query 249025 AACAAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCA 249082 || | |||||| || ||||| || | | |||| | || ||||| | || || | Sbjct 51221 CTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 51162 Query 249083 TTTATGACACGCTTAA 249098 | || |||||||| || Sbjct 51161 TCTACGACACGCTCAA 51146 >seq272 Length=297088 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475 ||| | ||| |||||||| ||| |||| | ||||||| | | | ||| ||||||||| | Sbjct 225223 CTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTT 225164 Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535 ||||| | ||||| |||| || || ||||| || || | |||||| ||| || Sbjct 225163 GGAGTAGATTTCCATCGTCCGGCGGAGGGCCTGCTGGGCGCCTGATGTCATGCTGTCGGC 225104 Query 115536 CTCGTCGAGAACGACAATCTT 115556 ||||||||| | ||| | ||| Sbjct 225103 CTCGTCGAGGATGACGAGCTT 225083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761983800128