Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq234 96.9 7e-15
seq49 93.3 9e-14
seq272 84.2 5e-11
>seq234
Length=379894
Score = 96.9 bits (106), Expect = 7e-15
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076
|| |||| ||||| ||||| |||||||| || || || || || ||||| ||| | | |
Sbjct 310111 TCTACGGGCCTCCGGGAACCGGCAAGACCTCGACGATTCTTGCTCTGGCTCGACGCATCT 310170
Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136
||| | ||||||| | || || ||||| || ||||| || ||||| |||||
Sbjct 310171 ACGGCACCGAGAACATGCGGCAGATGGTCCTCGAACTCAACGCCTCAGACGATCGCGGAA 310230
Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167
| |||||||||||||| |||||||||| ||
Sbjct 310231 TCGACGTCGTCCGCGAGCAGATCAAGACCTT 310261
>seq49
Length=112291
Score = 93.3 bits (102), Expect = 9e-14
Identities = 213/316 (67%), Gaps = 16/316 (5%)
Strand=Plus/Minus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | || || | ||| | | ||| | ||||| || ||||||| |
Sbjct 51453 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTCGGCTTCAAGACCCTGGAGAGA 51394
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| || || ||||| | || |||||||| | || || ||||||||| | |||||
Sbjct 51393 TCATACCTACTCAAGCTCGACGGCAAGATTGCCGAGAGACCGCAGCACATGATCATGCGT 51334
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967
|| || ||||| || | || ||||| | ||| |||| ||||||| |||| |
Sbjct 51333 GTTGCAGTCGGCAT---CTGGGGTGACAACGTTGAGCGCGTCATCGAGACCTACAACTTG 51277
Query 248968 ATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTC 249024
||| || | || | || || ||| | || || |||||||||||||||||| |
Sbjct 51276 ATGTCCAGCAAGTTCT---TCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACC--C 51222
Query 249025 AACAAT--CAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCA 249082
|| | |||||| || ||||| || | | |||| | || ||||| | || || |
Sbjct 51221 CTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAGACTCCATTGAGGGTA 51162
Query 249083 TTTATGACACGCTTAA 249098
| || |||||||| ||
Sbjct 51161 TCTACGACACGCTCAA 51146
>seq272
Length=297088
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 115416 CTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCT 115475
||| | ||| |||||||| ||| |||| | ||||||| | | | ||| ||||||||| |
Sbjct 225223 CTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCAGGCGAAGGCGAAGCGCGTCGTGTT 225164
Query 115476 CGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGC 115535
||||| | ||||| |||| || || ||||| || || | |||||| ||| ||
Sbjct 225163 GGAGTAGATTTCCATCGTCCGGCGGAGGGCCTGCTGGGCGCCTGATGTCATGCTGTCGGC 225104
Query 115536 CTCGTCGAGAACGACAATCTT 115556
||||||||| | ||| | |||
Sbjct 225103 CTCGTCGAGGATGACGAGCTT 225083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073761983800128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |