Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-20
>seq6
Length=179136
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193
||||| || ||||||||||||||| || || ||| |||| | || || || ||
Sbjct 30816 TGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTGC 30757
Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253
||||| || || ||||| ||||| ||||||||||| | ||||||||||| || ||
Sbjct 30756 TTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTC 30697
Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313
||| || | | | |||| | || ||||| | |||||||||||||| |||
Sbjct 30696 GACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGTC 30637
Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336
|||||||| || |||||||||||
Sbjct 30636 AGAGTCTTGACGAAGATTTGCAT 30614
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| ||||| |||||||||||||||||||||| ||| |||| |||| ||
Sbjct 30594 ACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCCTCA 30535
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || |||||||| || | ||||| ||||| || || | |||||||||||| |
Sbjct 30534 AGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGA 30475
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || | ||| ||||| | ||| || ||||||
Sbjct 30474 ATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTG 30415
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || || ||||| ||
Sbjct 30414 CCGGTGAGGGTCTTGAC 30398
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | ||| | | || | ||| ||||| ||||||||||||||||| ||| |
Sbjct 31069 GCCACCACGCAAGCGGAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCT 31010
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| ||| |||| |||| ||| || || ||||| || | ||||| ||||| || ||
Sbjct 31009 CAAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGG 30950
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCA 45287
| |||||||||||| ||| || ||| | || | || | |||| | ||| |
Sbjct 30949 GATGCCCTCCTTGTCCTGAATCTTGGACTTCA-CGTTGTCAATCGTGTCGGAAGACTCGA 30891
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
| || | || || ||||| || |||| ||||| || ||||| |||||
Sbjct 30890 CTTCTAACGTGATTGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395073654391741
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |