Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq49 340 2e-88
seq179 129 5e-25
seq6 120 3e-22
seq57 102 7e-17
>seq49
Length=112291
Score = 340 bits (376), Expect = 2e-88
Identities = 1220/1890 (65%), Gaps = 39/1890 (2%)
Strand=Plus/Plus
Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162
||||| || || || ||||| |||| | | || | | ||| || || || ||||||
Sbjct 49586 TCTTGGTCGACGGTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATG 49645
Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT--CCATAAC 22220
|||||||| ||||| | |||||| | ||| || || || |||||| ||||
Sbjct 49646 CCCGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTGGT-AATTTTGCCCATGG- 49703
Query 22221 TCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280
| || | ||||| | |||| ||||| ||| ||||| || || || || ||||
Sbjct 49704 TAGGATCCTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGG 49763
Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340
| ||||| | | | |||||| || |||||||| |||||||||||||| | | |
Sbjct 49764 CAGCCATCTGCACAACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTA 49823
Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400
||| || || ||| |||||||||| ||||| | | ||||| || |
Sbjct 49824 CCTCGGCAGGAATGTTGGGGATGTTCTGGACGGAACCGTTCTCGGCGATGATACGGTTCT 49883
Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460
| || | ||| |||||| || ||| || | |||||| | ||| |||| || |
Sbjct 49884 TCATGGCATCAGACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGA 49943
Query 22461 CTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519
|||| ||||| || | ||||| | || || |||||||||||||| || | ||||||||
Sbjct 49944 CTTGGAACTCTCCAG-CAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAG 50002
Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579
| || ||||| |||| ||||| | || || || || ||||| || || | || ||
Sbjct 50003 CACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGA 50062
Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637
||| | | || |||| |||| | | || ||| || ||| ||||| || |
Sbjct 50063 CTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTCAGAGAGTC--CCAATCCCAAAGGT 50120
Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGC 22697
| || ||| | ||||| |||||| ||||| || | | ||| || || ||
Sbjct 50121 CAGAGGGCTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGC 50177
Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCG 22756
| |||||||| ||| | ||| | | ||| | | | | | | || ||
Sbjct 50178 CCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACT-GAACCGACATAGTCAGAGCA 50236
Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTC 22812
| | || || ||||| ||||| |||||||| | || ||| || || |||
Sbjct 50237 GCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCAGGAGA----TTC 50292
Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872
| | ||||| || | | ||| || || || | |||||| || || | |||||| ||
Sbjct 50293 GAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGGG 50352
Query 22873 TCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGA 22928
|||| || || || |||| ||| || | || || || ||| |
Sbjct 50353 ACGGTGACGCATGTTG----CTATTGCGGGCCTCAGGAACGGGGTAGTGGTTGACATCAA 50408
Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988
| | |||||||||| | || | | || | | |||||||
Sbjct 50409 TGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGT 50468
Query 22989 AAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045
| || ||| ||||| |||| || | | ||||| || || | ||||| || |
Sbjct 50469 AGACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAG 50528
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
| ||||| || || |||||| | || || || || || ||| | || |
Sbjct 50529 CGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGG 50588
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
|||| | || |||||||||| || || || | ||||||||| |||||| | ||
Sbjct 50589 TGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGT 50648
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225
|||| ||||| ||| | ||||| || || ||| | |||| || | | |||
Sbjct 50649 TGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCTTGATG-GTC 50707
Query 23226 GCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284
|| ||| ||| || ||||||||| | |||||| || || || || | |||||
Sbjct 50708 TTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAG 50767
Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344
||||| ||||| ||||| | | | ||||||||||| |||| | || || ||
Sbjct 50768 CAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCG 50827
Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404
|| | |||| || ||||| || ||||| || || ||| || ||||| || || |||
Sbjct 50828 ACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGACC 50887
Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464
||||| |||||| |||||| || ||||| || || || || || || ||||| |||
Sbjct 50888 TCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCGTGCCAGGGC 50947
Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524
|| ||||||| ||| || || || || | |||||| || || ||||||||||| || |||
Sbjct 50948 TCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGCGAGCC 51007
Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584
||||| ||| | || | ||||| || | || ||||| || | |||| ||| ||
Sbjct 51008 GTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCA 51067
Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644
| | || || | || || | | ||| ||| || ||| ||||| ||| || ||
Sbjct 51068 ATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCCACCGGCCATCTTG 51127
Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704
|| ||||| ||||| || || ||||||||||| ||||| ||| ||| || || |
Sbjct 51128 GAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATG 51187
Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTAGCGGCCGAGAACAGTGTCGG 23763
|||| | ||| || ||||||| || || || || ||| |||| ||| ||||| ||
Sbjct 51188 TCGACGAGGAAGCAAGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGG 51246
Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823
|||||| || ||| | | ||||| | ||||| || |||||| || ||||
Sbjct 51247 AGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAAC 51306
Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883
|| || || || |||| || || ||||| ||||||| || ||||||||| | |
Sbjct 51307 GTTGTCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAAT 51366
Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943
||||| | |||| || ||||| | | || || || || || || || | ||
Sbjct 51367 CTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTA 51426
Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973
||| ||||| || |||| || ||||| ||
Sbjct 51427 GTTGAAGTCGCGGTCGTAGACAATGGCAGA 51456
>seq179
Length=397792
Score = 129 bits (142), Expect = 5e-25
Identities = 278/408 (68%), Gaps = 16/408 (4%)
Strand=Plus/Plus
Query 57903 CCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG-GC-CA 57960
||||| || ||||||||| || ||| | | |||||||| | ||| | | || ||
Sbjct 380753 CCCGCCATTCGCAAGAAGGCCGACTGGGCCTTGAAATGGATCA---GCGACGAGAGCTCA 380809
Query 57961 -CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019
| |||||| || | || | || |||||||| || || ||||| ||||| ||
Sbjct 380810 TCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCG 380869
Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079
|| || | || || ||| | ||||| || || || ||||| || ||||| || ||||
Sbjct 380870 TTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 380929
Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139
||| | || || ||||||||||| || || ||||| ||||| |||||| |||||||||||
Sbjct 380930 GAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCAC 380989
Query 58140 ATTGTCAATAAACCGACGCGGGATCGCATCTT-----GGACATTATCACCGAGGCGGTCG 58194
|||| |||| | | | ||| || |||||| || ||| ||||||
Sbjct 380990 ---CTCAA-GCACCGCCCCAACA-AGCAGGTTATTGAGGACATCATTGTCGATGCGGTCA 381044
Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254
||| || | ||||| | || || || || || || | ||||| ||||||
Sbjct 381045 AGATTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCA 381104
Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302
| |||||| ||||||||||||| ||||| ||| | || ||| |||
Sbjct 381105 ACTTGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCG 381152
>seq6
Length=179136
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||||||||||||||| ||||| || |||| || ||| | ||
Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || |||||||| ||| | || |||||||||
Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||| | || || ||||| || ||| | || || | || || |||||||||
Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || || || || ||||| || ||| | || | || ||||
Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGTCCTTCGCCTCCGCGGTGGTA 30842
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || ||||| | || || || | |||
Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||||||||| ||| | || || ||||||
Sbjct 30902 GACACGATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 30961
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||||||||| || ||||||||| || |||||||||| |||
Sbjct 30962 CAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGCGATTACAAC 31021
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || ||||| || ||||| || || ||
Sbjct 31022 ATTCAGAAGGAATCTACGCTTCACCTTGTCCT 31053
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| ||||| || || ||||| || |||||| | || ||||| | || || | |||
Sbjct 30396 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 30455
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | || || || || ||||||||| ||| | || || |||||||||||||| |
Sbjct 30456 ACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTA 30515
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| ||||| ||||| || | || ||| | ||| || ||| || |||||||| || |
Sbjct 30516 TCTTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGG 30575
Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| || || || || |||| || | || | |||||||
Sbjct 30576 AGTCTACGCTCCACTTGGTTCTCCGTCTCCGTGGCGGTA 30614
>seq57
Length=484889
Score = 102 bits (112), Expect = 7e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 315694 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 315753
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||| ||||| ||| | || ||||
Sbjct 315754 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCG 315813
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || |||||||| || ||| | || ||| || | || |
Sbjct 315814 ACCAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACT 315873
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || || || || || || ||||| || | ||| | || ||||
Sbjct 315874 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 315927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764611362320
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