Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq49 340 2e-88 seq179 129 5e-25 seq6 120 3e-22 seq57 102 7e-17 >seq49 Length=112291 Score = 340 bits (376), Expect = 2e-88 Identities = 1220/1890 (65%), Gaps = 39/1890 (2%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || ||||| |||| | | || | | ||| || || || |||||| Sbjct 49586 TCTTGGTCGACGGTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATG 49645 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT--CCATAAC 22220 |||||||| ||||| | |||||| | ||| || || || |||||| |||| Sbjct 49646 CCCGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTGGT-AATTTTGCCCATGG- 49703 Query 22221 TCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 | || | ||||| | |||| ||||| ||| ||||| || || || || |||| Sbjct 49704 TAGGATCCTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGG 49763 Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 | ||||| | | | |||||| || |||||||| |||||||||||||| | | | Sbjct 49764 CAGCCATCTGCACAACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTA 49823 Query 22341 TCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 ||| || || ||| |||||||||| ||||| | | ||||| || | Sbjct 49824 CCTCGGCAGGAATGTTGGGGATGTTCTGGACGGAACCGTTCTCGGCGATGATACGGTTCT 49883 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | || | ||| |||||| || ||| || | |||||| | ||| |||| || | Sbjct 49884 TCATGGCATCAGACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGA 49943 Query 22461 CTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 |||| ||||| || | ||||| | || || |||||||||||||| || | |||||||| Sbjct 49944 CTTGGAACTCTCCAG-CAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAG 50002 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 | || ||||| |||| ||||| | || || || || ||||| || || | || || Sbjct 50003 CACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGA 50062 Query 22580 GAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGAT 22637 ||| | | || |||| |||| | | || ||| || ||| ||||| || | Sbjct 50063 CTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTCAGAGAGTC--CCAATCCCAAAGGT 50120 Query 22638 CGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGC 22697 | || ||| | ||||| |||||| ||||| || | | ||| || || || Sbjct 50121 CAGAGGGCTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGC 50177 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACGCG 22756 | |||||||| ||| | ||| | | ||| | | | | | | || || Sbjct 50178 CCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACT-GAACCGACATAGTCAGAGCA 50236 Query 22757 CCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTC 22812 | | || || ||||| ||||| |||||||| | || ||| || || ||| Sbjct 50237 GCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCAGGAGA----TTC 50292 Query 22813 GTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGG 22872 | | ||||| || | | ||| || || || | |||||| || || | |||||| || Sbjct 50293 GAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGGG 50352 Query 22873 TCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGA 22928 |||| || || || |||| ||| || | || || || ||| | Sbjct 50353 ACGGTGACGCATGTTG----CTATTGCGGGCCTCAGGAACGGGGTAGTGGTTGACATCAA 50408 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | | |||||||||| | || | | || | | ||||||| Sbjct 50409 TGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGT 50468 Query 22989 AAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGG 23045 | || ||| ||||| |||| || | | ||||| || || | ||||| || | Sbjct 50469 AGACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAG 50528 Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 | ||||| || || |||||| | || || || || || ||| | || | Sbjct 50529 CGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGG 50588 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 |||| | || |||||||||| || || || | ||||||||| |||||| | || Sbjct 50589 TGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGT 50648 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 |||| ||||| ||| | ||||| || || ||| | |||| || | | ||| Sbjct 50649 TGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCTTGATG-GTC 50707 Query 23226 GCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAA 23284 || ||| ||| || ||||||||| | |||||| || || || || | ||||| Sbjct 50708 TTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAG 50767 Query 23285 CAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCA 23344 ||||| ||||| ||||| | | | ||||||||||| |||| | || || || Sbjct 50768 CAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCG 50827 Query 23345 ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACC 23404 || | |||| || ||||| || ||||| || || ||| || ||||| || || ||| Sbjct 50828 ACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGACC 50887 Query 23405 TCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGC 23464 ||||| |||||| |||||| || ||||| || || || || || || ||||| ||| Sbjct 50888 TCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCGTGCCAGGGC 50947 Query 23465 TCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCC 23524 || ||||||| ||| || || || || | |||||| || || ||||||||||| || ||| Sbjct 50948 TCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGCGAGCC 51007 Query 23525 GTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCC 23584 ||||| ||| | || | ||||| || | || ||||| || | |||| ||| || Sbjct 51008 GTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCA 51067 Query 23585 ACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTC 23644 | | || || | || || | | ||| ||| || ||| ||||| ||| || || Sbjct 51068 ATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCCACCGGCCATCTTG 51127 Query 23645 GATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTC 23704 || ||||| ||||| || || ||||||||||| ||||| ||| ||| || || | Sbjct 51128 GAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATG 51187 Query 23705 GCGACCAAGAAACACGAAGACATTTGCGCTTTG-GGCGTAGCGGCCGAGAACAGTGTCGG 23763 |||| | ||| || ||||||| || || || || ||| |||| ||| ||||| || Sbjct 51188 TCGACGAGGAAGCAAGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGG 51246 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 |||||| || ||| | | ||||| | ||||| || |||||| || |||| Sbjct 51247 AGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAAC 51306 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || || || || |||| || || ||||| ||||||| || ||||||||| | | Sbjct 51307 GTTGTCACCCCAGATGCCGACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAAT 51366 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||||| | |||| || ||||| | | || || || || || || || | || Sbjct 51367 CTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTA 51426 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||| ||||| || |||| || ||||| || Sbjct 51427 GTTGAAGTCGCGGTCGTAGACAATGGCAGA 51456 >seq179 Length=397792 Score = 129 bits (142), Expect = 5e-25 Identities = 278/408 (68%), Gaps = 16/408 (4%) Strand=Plus/Plus Query 57903 CCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG-GC-CA 57960 ||||| || ||||||||| || ||| | | |||||||| | ||| | | || || Sbjct 380753 CCCGCCATTCGCAAGAAGGCCGACTGGGCCTTGAAATGGATCA---GCGACGAGAGCTCA 380809 Query 57961 -CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGC 58019 | |||||| || | || | || |||||||| || || ||||| ||||| || Sbjct 380810 TCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCG 380869 Query 58020 TTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 || || | || || ||| | ||||| || || || ||||| || ||||| || |||| Sbjct 380870 TTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 380929 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 ||| | || || ||||||||||| || || ||||| ||||| |||||| ||||||||||| Sbjct 380930 GAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCAC 380989 Query 58140 ATTGTCAATAAACCGACGCGGGATCGCATCTT-----GGACATTATCACCGAGGCGGTCG 58194 |||| |||| | | | ||| || |||||| || ||| |||||| Sbjct 380990 ---CTCAA-GCACCGCCCCAACA-AGCAGGTTATTGAGGACATCATTGTCGATGCGGTCA 381044 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 ||| || | ||||| | || || || || || || | ||||| |||||| Sbjct 381045 AGATTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCA 381104 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 | |||||| ||||||||||||| ||||| ||| | || ||| ||| Sbjct 381105 ACTTGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCG 381152 >seq6 Length=179136 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||||||||||||||| ||||| || |||| || ||| | || Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || |||||||| ||| | || ||||||||| Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || ||||| || ||| | || || | || || ||||||||| Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||||| || ||| | || | || |||| Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGTCCTTCGCCTCCGCGGTGGTA 30842 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || ||||| | || || || | ||| Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| ||| | || || |||||| Sbjct 30902 GACACGATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 30961 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| || ||||||||| || |||||||||| ||| Sbjct 30962 CAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGCGATTACAAC 31021 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| || ||||| || || || Sbjct 31022 ATTCAGAAGGAATCTACGCTTCACCTTGTCCT 31053 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||| || || ||||| || |||||| | || ||||| | || || | ||| Sbjct 30396 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 30455 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | || || || || ||||||||| ||| | || || |||||||||||||| | Sbjct 30456 ACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTA 30515 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | ||||| ||||| || | || ||| | ||| || ||| || |||||||| || | Sbjct 30516 TCTTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGG 30575 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || || || || |||| || | || | ||||||| Sbjct 30576 AGTCTACGCTCCACTTGGTTCTCCGTCTCCGTGGCGGTA 30614 >seq57 Length=484889 Score = 102 bits (112), Expect = 7e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 315694 CAATCATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGT 315753 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||| ||||| ||| | || |||| Sbjct 315754 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCG 315813 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || |||||||| || ||| | || ||| || | || | Sbjct 315814 ACCAGCAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACT 315873 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || || || || ||||| || | ||| | || |||| Sbjct 315874 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGTA 315927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764611362320