Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq179 140 6e-28 seq49 87.8 4e-12 >seq179 Length=397792 Score = 140 bits (154), Expect = 6e-28 Identities = 300/444 (68%), Gaps = 17/444 (4%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||| || || ||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct 380828 GTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGG 380887 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| |||| |||||| ||| |||| ||| | ||| Sbjct 380888 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGAC 380947 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCC 102096 || || || || |||||||| ||| || ||| | | | | ||| | Sbjct 380948 GAGGGCCTGCACACTGACTTTGCCTGC---CTATTG---TACTCTCACCTCAAGCACCGC 381001 Query 102097 ATCAAGAGAAAGGATTCTTGA------AATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150 ||| | ||| || |||| |||||| || || ||| ||||| || || Sbjct 381002 CCCAACAAGCAGG-TTATTGAGGACATCATTGTC---GATGCGGTCAAGATTGAGCAGGA 381057 Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210 || | || | | |||||| | | || ||||||| ||| ||||||| || Sbjct 381058 GTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCA 381117 Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAA 102270 ||||||||| || || || || || ||||| | | || || ||| ||| || Sbjct 381118 GTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAACGACAAGGTCTACAA 381177 Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330 | ||||||||||| |||||||| || |||||||||| ||||||||||| || Sbjct 381178 GTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGAAAGACCAACTTCTT 381237 Query 102331 TGAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | || ||||| || || Sbjct 381238 CGAGAAGCGTGTTGCCGACTACCA 381261 >seq49 Length=112291 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 93570 GTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGG 93629 ||| || |||||||| ||| | ||| ||| ||| | || ||||||||||| | || Sbjct 49936 GTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGG 49995 Query 93630 CTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAAC 93689 || ||| | || |||||||| ||||| | |||||| |||||||||||||||||||| Sbjct 49996 TTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 50055 Query 93690 AAACATTGAATTGTGAACACCATACT 93715 | || ||| | ||||||| || Sbjct 50056 GAGCAGACTGTTGCGGACACCATGCT 50081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989579930026555