Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq179 140 6e-28
seq49 87.8 4e-12
>seq179
Length=397792
Score = 140 bits (154), Expect = 6e-28
Identities = 300/444 (68%), Gaps = 17/444 (4%)
Strand=Plus/Plus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||| || || ||||| || |||||||| || ||||| ||||| ||||||||||||
Sbjct 380828 GTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGG 380887
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
||||||| | ||| | |||||||||| |||| |||||| ||| |||| ||| | |||
Sbjct 380888 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGAC 380947
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGA-TACCCC 102096
|| || || || |||||||| ||| || ||| | | | | ||| |
Sbjct 380948 GAGGGCCTGCACACTGACTTTGCCTGC---CTATTG---TACTCTCACCTCAAGCACCGC 381001
Query 102097 ATCAAGAGAAAGGATTCTTGA------AATTGTCACTGAAGCCGTCCGAATTGAACAAGA 102150
||| | ||| || |||| |||||| || || ||| ||||| || ||
Sbjct 381002 CCCAACAAGCAGG-TTATTGAGGACATCATTGTC---GATGCGGTCAAGATTGAGCAGGA 381057
Query 102151 ATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCA 102210
|| | || | | |||||| | | || ||||||| ||| ||||||| ||
Sbjct 381058 GTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCA 381117
Query 102211 GTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAA 102270
||||||||| || || || || || ||||| | | || || ||| ||| ||
Sbjct 381118 GTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAACGACAAGGTCTACAA 381177
Query 102271 TGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTT 102330
| ||||||||||| |||||||| || |||||||||| ||||||||||| ||
Sbjct 381178 GTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGAAAGACCAACTTCTT 381237
Query 102331 TGAAAAGAGAGTCGCCGAGTATCA 102354
|| ||| | || ||||| || ||
Sbjct 381238 CGAGAAGCGTGTTGCCGACTACCA 381261
>seq49
Length=112291
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 93570 GTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGG 93629
||| || |||||||| ||| | ||| ||| ||| | || ||||||||||| | ||
Sbjct 49936 GTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGG 49995
Query 93630 CTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAAC 93689
|| ||| | || |||||||| ||||| | |||||| ||||||||||||||||||||
Sbjct 49996 TTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 50055
Query 93690 AAACATTGAATTGTGAACACCATACT 93715
| || ||| | ||||||| ||
Sbjct 50056 GAGCAGACTGTTGCGGACACCATGCT 50081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989579930026555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |