Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq57 91.5 1e-13 >seq6 Length=179136 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || |||||||||||||| || |||| || |||||||| || ||| Sbjct 30810 GTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCA 30751 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| ||| ||||| |||||||| ||||| || ||||| ||| || || Sbjct 30750 GCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTG 30691 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | || | ||||||||| |||| || Sbjct 30690 ACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGTCAGAGTC 30631 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 30630 TTGACGAAGATTTGCATA 30613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| ||||| | ||||||||| || |||||||| || ||| | Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || || || || || || |||| ||||| ||||| || || || Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | || || | | ||| || Sbjct 30492 ATGCCCTCCTTGTCC-TGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAAC 30434 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 ||||| ||| | ||||||||||| | || || |||| Sbjct 30433 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 30396 >seq57 Length=484889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || | |||| | Sbjct 315913 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCG 315854 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || ||||| ||||||| || ||||| ||||| || ||||| || || Sbjct 315853 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTA 315794 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||||| ||| | Sbjct 315793 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 315734 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || ||||| || ||||| Sbjct 315733 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062009543200