Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq49 116 5e-21
>seq49
Length=112291
Score = 116 bits (128), Expect = 5e-21
Identities = 344/530 (65%), Gaps = 3/530 (1%)
Strand=Plus/Plus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| ||||||||||| | || || || | ||||| || ||||||||||| || || |||
Sbjct 49598 GTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATGCCCGTCTTGAGA 49657
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920
|| || |||| || ||| ||||| || || | |||| | ||||||| |||
Sbjct 49658 CCAAGCTTCCAGCCAGCAAAGTGCATGCTGGTAATTTTGCCCATGGTAGGATCCTTCATG 49717
Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980
|| || || | ||||| || ||||||||||| || | ||| |||||||| | |
Sbjct 49718 TGGATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGGCAGCCATCTGCACA 49777
Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040
| || || | |||||||| | || || || | ||| | || | |||| |
Sbjct 49778 ACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTACCTCGGCAGGAATG 49837
Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097
|| | | ||||| | ||| || || || || || | || || || | ||| |
Sbjct 49838 TTGGGGATGTTCTGGACGGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGAC 49897
Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157
|| || | ||| | | || | | || || || || ||||| || ||||||
Sbjct 49898 CACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGACTTGGAACTCTCCA 49957
Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217
| | || | ||| |||||| || ||||| ||||| | |||| || || |||
Sbjct 49958 GCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCC 50017
Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277
||||| || | ||| || ||||| ||||| || || || | ||||| || | | ||||
Sbjct 50018 AAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACACCA 50077
Query 71278 TGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327
|| ||| | || || ||||| ||||||| |||||| || || ||
Sbjct 50078 TGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAAAGGTCAGAGGG 50127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671136507053960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |