Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq49 116 5e-21 >seq49 Length=112291 Score = 116 bits (128), Expect = 5e-21 Identities = 344/530 (65%), Gaps = 3/530 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||||||||| | || || || | ||||| || ||||||||||| || || ||| Sbjct 49598 GTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATGCCCGTCTTGAGA 49657 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 || || |||| || ||| ||||| || || | |||| | ||||||| ||| Sbjct 49658 CCAAGCTTCCAGCCAGCAAAGTGCATGCTGGTAATTTTGCCCATGGTAGGATCCTTCATG 49717 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 70980 || || || | ||||| || ||||||||||| || | ||| |||||||| | | Sbjct 49718 TGGATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGGCAGCCATCTGCACA 49777 Query 70981 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 71040 | || || | |||||||| | || || || | ||| | || | |||| | Sbjct 49778 ACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTACCTCGGCAGGAATG 49837 Query 71041 TTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTC 71097 || | | ||||| | ||| || || || || || | || || || | ||| | Sbjct 49838 TTGGGGATGTTCTGGACGGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGAC 49897 Query 71098 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCA 71157 || || | ||| | | || | | || || || || ||||| || |||||| Sbjct 49898 CACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGACTTGGAACTCTCCA 49957 Query 71158 GACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCC 71217 | | || | ||| |||||| || ||||| ||||| | |||| || || ||| Sbjct 49958 GCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCC 50017 Query 71218 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCA 71277 ||||| || | ||| || ||||| ||||| || || || | ||||| || | | |||| Sbjct 50018 AAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACACCA 50077 Query 71278 TGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 || ||| | || || ||||| ||||||| |||||| || || || Sbjct 50078 TGCTCCTTGATCTGCTCCTTCAGAGAGTCCCAATCCCAAAGGTCAGAGGG 50127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136507053960