Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq179 134 2e-26 >seq179 Length=397792 Score = 134 bits (148), Expect = 2e-26 Identities = 317/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 |||||| ||||| | || || | |||| | | ||||| || |||||||| || ||| Sbjct 380789 TGGATCAGCGACGAGAGCTCATCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAG 380848 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| ||| || || |||| || |||||||||||||| || |||||| Sbjct 380849 GGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATG 380908 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || ||||| | |||||| | || ||||| ||||||||||| ||| ||||||| Sbjct 380909 CCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTT 380968 Query 125571 GCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627 ||| ||| ||| || || || | | || ||| | | ||| | | || Sbjct 380969 GCCTGCCTATTGTACTCTCACCTCAAGCACCGCCCC-----AACAAGCAG-GTTATTGAG 381022 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 | ||| |||||| |||||| || | ||| || || ||||| | || || | || Sbjct 381023 GACAT---CATTGT---CGATGCGGTCAAGATTGAGCAGGAGTTCTTGACTGAGGCTCTG 381076 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || | | | |||||||||| ||| | ||| ||||||| ||||| || || Sbjct 381077 CCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGCT 381136 Query 125748 GATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTT 125804 || ||||| || || ||||| || |||| | ||||| | || ||||| Sbjct 381137 GACCGTCTCTTGGTCG---CTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTC 381193 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||||||| | ||| || || | || ||||||||||| ||||||||| Sbjct 381194 GATTTCATGGAGAACATTTCCCTCGGCGGAAAGACCAACTTCTTCGAGAAG 381244 Score = 125 bits (138), Expect = 1e-23 Identities = 236/338 (70%), Gaps = 12/338 (4%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | |||||| Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | || | | || || |||| | || || || Sbjct 380427 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 380485 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||||| | |||||||| |||| ||||| || |||||||| || || || ||||| | Sbjct 380486 CCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGA-GC 380544 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 | ||| ||| | ||||| |||| ||| ||||| ||||| ||||| |||||| Sbjct 380545 GCTTCAGCGGCGAGGTCCAGATTCCCGAGG-CTCGTTGCTTCTACGGTTTCCAGATCATG 380603 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---T 125312 || |||||| | ||||| || | ||||| ||| || |||| ||||| || | Sbjct 380604 ATGGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTACATCAAGGAGCCT 380663 Query 125313 CCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 |||| || | || ||||||||||| || ||||| Sbjct 380664 GCGCAGCGCACGTAC---CTCTTTAACGCCATTGACAC 380698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056226499960