Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq179 134 2e-26
>seq179
Length=397792
Score = 134 bits (148), Expect = 2e-26
Identities = 317/471 (67%), Gaps = 21/471 (4%)
Strand=Plus/Plus
Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450
|||||| ||||| | || || | |||| | | ||||| || |||||||| || |||
Sbjct 380789 TGGATCAGCGACGAGAGCTCATCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAG 380848
Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510
|| |||||||| ||| || || |||| || |||||||||||||| || ||||||
Sbjct 380849 GGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATG 380908
Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570
|| || ||||| | |||||| | || ||||| ||||||||||| ||| |||||||
Sbjct 380909 CCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTT 380968
Query 125571 GCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAG 125627
||| ||| ||| || || || | | || ||| | | ||| | | ||
Sbjct 380969 GCCTGCCTATTGTACTCTCACCTCAAGCACCGCCCC-----AACAAGCAG-GTTATTGAG 381022
Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687
| ||| |||||| |||||| || | ||| || || ||||| | || || | ||
Sbjct 381023 GACAT---CATTGT---CGATGCGGTCAAGATTGAGCAGGAGTTCTTGACTGAGGCTCTG 381076
Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747
|| | | | |||||||||| ||| | ||| ||||||| ||||| || ||
Sbjct 381077 CCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGCT 381136
Query 125748 GATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTT 125804
|| ||||| || || ||||| || |||| | ||||| | || |||||
Sbjct 381137 GACCGTCTCTTGGTCG---CTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTC 381193
Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||||||||| | ||| || || | || ||||||||||| |||||||||
Sbjct 381194 GATTTCATGGAGAACATTTCCCTCGGCGGAAAGACCAACTTCTTCGAGAAG 381244
Score = 125 bits (138), Expect = 1e-23
Identities = 236/338 (70%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| | ||||||
Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426
Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||| ||| | || | | || || |||| | || || ||
Sbjct 380427 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 380485
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
||||| | |||||||| |||| ||||| || |||||||| || || || ||||| |
Sbjct 380486 CCACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGA-GC 380544
Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255
| ||| ||| | ||||| |||| ||| ||||| ||||| ||||| ||||||
Sbjct 380545 GCTTCAGCGGCGAGGTCCAGATTCCCGAGG-CTCGTTGCTTCTACGGTTTCCAGATCATG 380603
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---T 125312
|| |||||| | ||||| || | ||||| ||| || |||| ||||| || |
Sbjct 380604 ATGGAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTACATCAAGGAGCCT 380663
Query 125313 CCGCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350
|||| || | || ||||||||||| || |||||
Sbjct 380664 GCGCAGCGCACGTAC---CTCTTTAACGCCATTGACAC 380698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741056226499960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |