Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 2e-21
>seq6
Length=179136
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||||| || |||||||| ||||| || || || || | ||| ||
Sbjct 30826 AAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATC 30767
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
|| || || ||||||||||| || | | ||| || || ||||| || || || || ||
Sbjct 30766 CTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTC 30707
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| ||||| | || ||||| || | ||| || || ||| ||||| || ||||| ||
Sbjct 30706 TTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGT 30647
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||| || || || || || || || || |||||
Sbjct 30646 CTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 113 bits (124), Expect = 1e-19
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || ||||| || ||||| | |||||| || ||||| || ||
Sbjct 30582 GTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAAGTTGCTTGCCG 30523
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || ||||| || || || || || ||||||||||| | ||
Sbjct 30522 GCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTCGACTTC 30463
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || ||||| || || || ||||| || || || ||
Sbjct 30462 ACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 30403
Query 104543 TTTAC 104547
|| ||
Sbjct 30402 TTGAC 30398
Score = 109 bits (120), Expect = 1e-18
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||||||||| ||||| || || |||| ||||| || || || || |||
Sbjct 30298 GTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCA 30239
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | |||||| || || || || ||||| || ||||||||||| | ||
Sbjct 30238 GCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTG 30179
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | |||||| | ||| ||||| || || || ||||| || ||
Sbjct 30178 ACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTTGCCGGT 30126
Score = 98.7 bits (108), Expect = 2e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||| |||||||| || || || | || | |||||||| | ||| || |||
Sbjct 31038 GTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCA 30979
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | ||| || ||||| || || || || || ||||||||||| | ||
Sbjct 30978 GCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTTC 30919
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || ||| || || || |||| || || ||||| || || | |||
Sbjct 30918 ACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGTC 30859
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 30858 TTGACGAAGATCTGCAT 30842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151393664514268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |