Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq49 132 6e-26
>seq49
Length=112291
Score = 132 bits (146), Expect = 6e-26
Identities = 452/700 (65%), Gaps = 16/700 (2%)
Strand=Plus/Plus
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| || || |||| |||||||| | | ||| || ||| | || |||| |||||
Sbjct 50780 CCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATG 50839
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|| ||||| || ||||| || || | || || || | | | ||||| || ||
Sbjct 50840 AATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCG 50899
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||||| ||||| | |||| | | | ||| | ||||| || || | ||| |||
Sbjct 50900 TGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATG 50959
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | ||||| || || || || || ||||| | ||| | ||| |||||||| |
Sbjct 50960 GCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAG 51019
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| || || | ||||| || | || ||||| |||| |||||| |||
Sbjct 51020 ACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 51079
Query 63468 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525
||||||| || | |||| |||| || || || ||||| || ||||| | |
Sbjct 51080 GTGGCACGGATGCGGTGGGCGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGG 51137
Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585
|||| || | |||||| ||||||||||| ||| || || |||||| | || |
Sbjct 51138 CGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGA 51197
Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645
| || ||||| ||| || || || || || || | || ||||| ||||| |
Sbjct 51198 AGCAAGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGG 51257
Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCC 63699
| || | || || | | ||||| ||||| || ||| | || | |||
Sbjct 51258 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCC 51317
Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759
| |||| || ||||| |||||||| | ||||||||| ||||| || | ||||||
Sbjct 51318 A--GATG----CCGACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGC 51371
Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819
|| | || | | ||| ||| | |||| || || || || || || | ||| |
Sbjct 51372 CGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGA 51431
Query 63820 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859
|||| || ||||| | ||| | |||| ||| | |||||
Sbjct 51432 AGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 51471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622944700424360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |