Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq49 132 6e-26 >seq49 Length=112291 Score = 132 bits (146), Expect = 6e-26 Identities = 452/700 (65%), Gaps = 16/700 (2%) Strand=Plus/Plus Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || || || |||| |||||||| | | ||| || ||| | || |||| ||||| Sbjct 50780 CCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATG 50839 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || ||||| || ||||| || || | || || || | | | ||||| || || Sbjct 50840 AATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCG 50899 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||||| ||||| | |||| | | | ||| | ||||| || || | ||| ||| Sbjct 50900 TGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATG 50959 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | ||||| || || || || || ||||| | ||| | ||| |||||||| | Sbjct 50960 GCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAG 51019 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || || | ||||| || | || ||||| |||| |||||| ||| Sbjct 51020 ACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCA 51079 Query 63468 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||||||| || | |||| |||| || || || ||||| || ||||| | | Sbjct 51080 GTGGCACGGATGCGGTGGGCGTTGA--GACCAATGCCACCGGCCATCTTGGAGATCATGG 51137 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 |||| || | |||||| ||||||||||| ||| || || |||||| | || | Sbjct 51138 CGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGA 51197 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 | || ||||| ||| || || || || || || | || ||||| ||||| | Sbjct 51198 AGCAAGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGG 51257 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT----AGCTGA--GTCTATATCCC 63699 | || | || || | | ||||| ||||| || ||| | || | ||| Sbjct 51258 TGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCC 51317 Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 | |||| || ||||| |||||||| | ||||||||| ||||| || | |||||| Sbjct 51318 A--GATG----CCGACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGC 51371 Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819 || | || | | ||| ||| | |||| || || || || || || | ||| | Sbjct 51372 CGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAGTATTGGTAGTTGA 51431 Query 63820 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63859 |||| || ||||| | ||| | |||| ||| | ||||| Sbjct 51432 AGTCGCGGTCGTAGACAATGGCAGAGTCGAGCTCTTCCTT 51471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944700424360