Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq49 93.3 4e-14
>seq49
Length=112291
Score = 93.3 bits (102), Expect = 4e-14
Identities = 211/313 (67%), Gaps = 11/313 (4%)
Strand=Plus/Plus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
|||||| || |||||| || ||||| | | ||||||| || | ||| ||||| ||
Sbjct 50716 CTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGC 50775
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356
| |||||| ||||| | ||| ||||| | | ||| | | | || ||| || ||||
Sbjct 50776 CAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCT-TCTCGACTCTCT 50834
Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416
|||| || ||||| || |||| | ||||| | ||| |||||||| | |||||
Sbjct 50835 TCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGACCTCCTCCT 50894
Query 148417 CACCCA---TATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473
|| | |||||| ||||||| || ||| || || |||||||| ||||| |
Sbjct 50895 TGCCGTGGTTCTTGCGC---AGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAA 50951
Query 148474 TGTATACGGTCATGGCGCCTTTCC---TTTTACCTCCTTGATCGACATGGCGTAGCATGC 148530
||| | || | ||| || | | ||||| ||||||||||| | ||| | ||
Sbjct 50952 GGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGT 51011
Query 148531 TATTAAAAACACG 148543
|||| || |||||
Sbjct 51012 TATTGAAGACACG 51024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478660479367120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |