Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq49 396 7e-105 >seq49 Length=112291 Score = 396 bits (438), Expect = 7e-105 Identities = 1177/1788 (66%), Gaps = 38/1788 (2%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGA 363449 ||||| | ||||| |||||| ||| |||||| ||| || | || | |||| || Sbjct 51417 TTCGGCTTCAAGACCCTGGAGAGATCATACCTA-CTCAAGCTCGACGGCAAGATTGCCGA 51359 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 | |||||||| ||| | ||||||||||| | || ||| | | ||||| Sbjct 51358 GAGACCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCG 51299 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAAC 363566 || || || || || || ||| | || || || | ||||| |||||| | || || Sbjct 51298 CGTCATCGAGACCTACAA-CTTG-ATGTCCAGCAAGT-TCTTCACCCACGCCTCTCCCAC 51242 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | | ||| || || || | | | ||| ||||||||||||| || | | ||||| Sbjct 51241 ACTCTTCAACGCCGGTACCCCTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAA 51182 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||| || ||||| |||||||||| ||||| || |||| || || | || ||||||| Sbjct 51181 GGAAGACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGAT 51122 Query 363687 TGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744 || || || |||||| | | || |||| | ||||| || | | || ||| | Sbjct 51121 GGCCGGTGGCATTGGTCTCAACGC-CCACCGCATCCGTGCCACTGG-CTCCTATATTGCC 51064 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 ||||| || |||||| || | | |||||||||||||| || | || || || Sbjct 51063 GGCACCAACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCT 51004 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | |||||||| || ||||| ||||| || || || || || || || ||||| Sbjct 51003 CGCTACGTCGATCAAGGTGGTAATAAGCGTCCTGGTGCCTTCGCCATTTACCTTGAGCCC 50944 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || |||||| | |||||||| | || || || || ||| || || ||||| | Sbjct 50943 TGGCACGCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTC 50884 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| || || || ||| ||| || ||| | | || | || |||||| | || ||| Sbjct 50883 CGTGCTCGCGACCTTTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAG 50824 Query 363985 GCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | | | | | ||| | ||| | || || | || || || ||||| | || | Sbjct 50823 --AAGAACGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCT 50766 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 || || || | | || | ||||| ||||| || |||||| |||| ||| |||| Sbjct 50765 ACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGCAAGA 50706 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || || |||||||| |||| || || | || | |||| |||||| || | || Sbjct 50705 CCATCAAGGCCCAGAAGCTTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCA-AC 50647 Query 364163 CCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||| | ||| | ||||| ||| | ||||||||| ||||||| || |||| || || Sbjct 50646 CCTTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACC 50587 Query 364222 ATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 || | |||| | ||||| || || ||||| ||||| ||| ||| || || ||| || Sbjct 50586 ATCC-GCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTCGC 50528 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA------AAAGATGGTACTTT 364334 || || ||| | || || |||| ||||| | || || || || ||| | Sbjct 50527 TGTCTGCAACTTGGCTTCTCTCGCCCTTCCTACTTTCGTTGACTACAACGAGGGTGTCTA 50468 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTT 364392 ||| |||| | ||| |||| || || | || | | | |||| | ||||| | Sbjct 50467 CGACTTCCAGAAGCTTCATGAGGTCACTCAGGTCGTCGTTC--GCAACTTGAACAAGATC 50410 Query 364393 ATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCG 364452 || || || | || || ||||||| ||| | || |||||||| || || Sbjct 50409 ATTGATGTCAACCACTACCCCGTTCCTGAGGCCCGCAATAGCAACATGCGTCACCGTCCC 50350 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGAT 364512 || ||||||||||| ||||| || || || | ||| | || ||| |||| || Sbjct 50349 ATCGGTCTTGGTGTCCAGGGTCTTGCCGATGCTTTCCTCGCCCTTCGCATGCCATTCGAA 50290 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG 364572 || ||||| || |||| || || ||| |||||||||| || || || ||| || || Sbjct 50289 TCTCCTGAGGCCCGTGACCTCAACAAGAAGATCTTTGAGACCATTTACCATGCTGCTCTG 50230 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 ||| ||| | | ||||| || | || | ||||| || || ||||| || ||| Sbjct 50229 ACTATGTCGGTTCAGTTGGCCAAGGAGGAAGGTACCTACTCCACGTACGAGGGCTCTCCT 50170 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAAC 364692 |||| ||||| | |||||| || | |||||||||| ||| |||| || ||| | Sbjct 50169 ATTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTTTGGGAT 50110 Query 364693 TGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC--TCC-CTCGTTAC 364748 ||||| | || | | || | ||| |||||||| |||||| || |||||| Sbjct 50109 TGGGACTCTCTGAAGGAGCAGA-TCAAGGAGCATGGTGTCCGCAACAGTCTGCTCGTT-- 50053 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || |||||||| || || || ||| | ||||| | || |||||||||||||||||||| Sbjct 50052 -GCTCCCATGCCTACTGCCTCCACTTCGCAGATTTTGGGCAACAACGAGTGCTTCGAACC 49994 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | ||| ||| |||| || || |||||| | ||||| || | || || || Sbjct 49993 CTATACGTCCAACATTTACCAGCGTCGTGTTCTTGCTGGAGAGTTCCAAGTCGTCAACCC 49934 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | || | || ||||| |||| || ||||| ||| |||||||||| ||| Sbjct 49933 CTGGCTGTTGAAAGATCTCGTCGACATGGGCTTGTGGTCTGATGCCATGAAGAACCGTAT 49874 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 |||||||| || ||||| || |||||||| || |||| | || | ||| || | Sbjct 49873 CATCGCCGAGAACGGTTCCGTCCAGAACATCCCCAACATTCCTGCCGAGGTAAAGGCTCT 49814 Query 364989 TTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 ||||| ||||| |||||||| ||| ||| || | | | ||||| ||||| ||||| Sbjct 49813 GTACAAGACCGTCTGGGAAATCTCCCAGCGTACCGTTGTGCAGATGGCTGCCGACCGCGG 49754 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 ||| || ||| ||| ||||| | ||| | ||||| | || ||| | ||| Sbjct 49753 TGCCTTCATCGACCAGTCACAGTCCCTCAACATCCACATGAAGGATCCTACCATGGGCAA 49694 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| |||||| || || ||||| ||||| ||||| || Sbjct 49693 AATTACCAGCATGCACTTTGCTGGCTGGAAGCTTGGTCTCAAGACGGG 49646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348239551022