Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq179 105 7e-18 >seq179 Length=397792 Score = 105 bits (116), Expect = 7e-18 Identities = 196/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || ||||| | || || || | ||||| || | |||||||| || ||| Sbjct 380653 ATGTAGGTGTCGATGAGTAGCGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGG 380594 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | ||| || | ||||| || || || | ||| ||||| Sbjct 380593 AAACCGTAGAAGCAACGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCAACGAGG 380534 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || || |||||||| || || || || | || || || || | Sbjct 380533 TTCTCATTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGTAC 380474 Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||||| || | | || | ||| ||| ||||| || || ||||| | || Sbjct 380473 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 380414 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 ||| | ||||| || || || || || || |||||||| | ||| || Sbjct 380413 TCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 380367 Score = 89.7 bits (98), Expect = 6e-13 Identities = 250/379 (66%), Gaps = 10/379 (3%) Strand=Plus/Minus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CGTAC 92985 ||||| || || || |||||||| |||||| | | ||||| || || ||| || | Sbjct 381138 TCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCA- 381080 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043 ||| ||||| || |||||||| || | ||| || || || || | ||| || Sbjct 381079 AGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCCTC 381020 Query 93044 ATTACTCTACTATTTGGTG--GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101 | || || || |||| | || ||| | | | ||||| || ||| ||||||| Sbjct 381019 AATAACCTGCTTGTTGGGGCGGTGCTTG----AGGTGAGAGTACAATAGGCAGGCAAAGT 380964 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 | || || | || ||||| || || || | ||| ||| ||| || | ||| || | | Sbjct 380963 CAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGA 380904 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221 | || || ||||||||||| || || || || || ||| || || ||||| || | Sbjct 380903 GACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAA 380844 Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281 | || || || || || | ||| | ||| || || | | |||||||||||| | Sbjct 380843 CAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCTCGTCGCTGATCCATTTCA 380784 Query 93282 AAGCCCAATCGGCtttttt 93300 | ||||| ||||| || || Sbjct 380783 AGGCCCAGTCGGCCTTCTT 380765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858565596040