Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq179 105 7e-18
>seq179
Length=397792
Score = 105 bits (116), Expect = 7e-18
Identities = 196/287 (68%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
||||| || ||||| | || || || | ||||| || | |||||||| || |||
Sbjct 380653 ATGTAGGTGTCGATGAGTAGCGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGG 380594
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | ||| || | ||||| || || || | ||| |||||
Sbjct 380593 AAACCGTAGAAGCAACGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCAACGAGG 380534
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| |||||||| || || |||||||| || || || || | || || || || |
Sbjct 380533 TTCTCATTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGTAC 380474
Query 93542 TTCTCATCATCTTTAAGC---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||||| || | | || | ||| ||| ||||| || || ||||| | ||
Sbjct 380473 TTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCC 380414
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
||| | ||||| || || || || || || |||||||| | ||| ||
Sbjct 380413 TCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 380367
Score = 89.7 bits (98), Expect = 6e-13
Identities = 250/379 (66%), Gaps = 10/379 (3%)
Strand=Plus/Minus
Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA-CGTAC 92985
||||| || || || |||||||| |||||| | | ||||| || || ||| || |
Sbjct 381138 TCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCGCA- 381080
Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT-- 93043
||| ||||| || |||||||| || | ||| || || || || | ||| ||
Sbjct 381079 AGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCCTC 381020
Query 93044 ATTACTCTACTATTTGGTG--GTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGT 93101
| || || || |||| | || ||| | | | ||||| || ||| |||||||
Sbjct 381019 AATAACCTGCTTGTTGGGGCGGTGCTTG----AGGTGAGAGTACAATAGGCAGGCAAAGT 380964
Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161
| || || | || ||||| || || || | ||| ||| ||| || | ||| || | |
Sbjct 380963 CAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCAGGCATGA 380904
Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCA 93221
| || || ||||||||||| || || || || || ||| || || ||||| || |
Sbjct 380903 GACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATACCCTCAA 380844
Query 93222 CGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTA 93281
| || || || || || | ||| | ||| || || | | |||||||||||| |
Sbjct 380843 CAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCTCGTCGCTGATCCATTTCA 380784
Query 93282 AAGCCCAATCGGCtttttt 93300
| ||||| ||||| || ||
Sbjct 380783 AGGCCCAGTCGGCCTTCTT 380765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556858565596040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |