Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq6 114 1e-20
seq259 95.1 1e-14
>seq6
Length=179136
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | || || || ||| | || || || || ||| | |
Sbjct 30614 ATGCAAATCTTCGTCAAGACTCTGACAGGCAAGACGATTACGCTCGAGGTCGAATCTTCA 30673
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || |||||||||||||| || || ||||| ||
Sbjct 30674 GACACCATTGACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAG 30733
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || ||||| || || ||| | |||||| |||||| | || ||||| |||
Sbjct 30734 CAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTGTCGGATTATAAC 30793
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| || || || ||| | ||| | || | || | ||||| |||
Sbjct 30794 ATTCAGAAGGAGTCTACCCTGCATCTCGTCCTTCGCCTCCGCGGTGGT 30841
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| ||||| || || | | |||||| | ||| || | ||
Sbjct 30410 ACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCGACAATGTGAAGTCG 30469
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || || || |||||||| || ||||||||
Sbjct 30470 AAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTATCTTCGCCGGCAAG 30529
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | ||||| ||||| | ||||| ||||||||||| || || || || | ||
Sbjct 30530 CAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACGCTCCAC 30589
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||| | || | || || |||
Sbjct 30590 TTGGTTCTCCGTCTCCGTGGCGGT 30613
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || ||||| || || |||| | ||||| || | ||
Sbjct 30842 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACAATCACGTTAGAAGTCGAGTCTTCC 30901
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || ||||| ||||||||||| || ||||| || ||
Sbjct 30902 GACACGATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCTGACCAG 30961
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || || ||||| || || || || ||||||| | ||||||||||
Sbjct 30962 CAGCGTCTCATTTTCGCTGGCAAGCAATTGGAAGACGGCCGCACCTTGAGCGATTACAAC 31021
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || ||||| ||
Sbjct 31022 ATTCAGAAGGAATCTAC 31038
>seq259
Length=323629
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286
||| || || || | || ||||| || | || ||||| || || || | || || |
Sbjct 46238 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGAT 46297
Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346
||| || |||| || || || ||||||||||| ||||| || || ||||| || |
Sbjct 46298 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTT 46357
Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| || || ||||| ||| | ||||| ||||||| |||||||||||||||| || ||
Sbjct 46358 GATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGATTACAACATCCAGAA 46417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419726357945365
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |