Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq311 96.9 7e-15
seq289 96.9 7e-15
>seq311
Length=547424
Score = 96.9 bits (106), Expect = 7e-15
Identities = 96/122 (79%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||||||||| || ||||| || || || ||| ||||| | ||| | | ||
Sbjct 150890 CTCACTCTCGCATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCTGCCT 150831
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||||| ||| ||| |||||||||| ||||||||||||||||| || |||||
Sbjct 150830 GCTCT-TGGCAACGCCCCCACTTGATCGTTCTTGACGAGCCTACCAACTACCTTGACCGT 150772
Query 280821 GA 280822
||
Sbjct 150771 GA 150770
>seq289
Length=600364
Score = 96.9 bits (106), Expect = 7e-15
Identities = 135/189 (71%), Gaps = 8/189 (4%)
Strand=Plus/Plus
Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA----C 280231
||||| ||||| ||||| || ||||| || || ||||| |||| ||||||||| |
Sbjct 97324 ATTGGCCCCAACGGTGCTGGCAAGTCCACTCTCATCAAGATCCTCACTGGCGAGGTCATC 97383
Query 280232 CCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291
|| || | || |||| |||||| |||||| |||| || | |||| | ||
Sbjct 97384 CCCAGCACCGGAAAGGTCGA----GAAGCACCCCAACTTGCGTATCGGTTACATTAAGCA 97439
Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351
|||||| || | ||| |||||| || || || | |||||| ||||| ||| | |||||
Sbjct 97440 GCACGCCCTCGAGCACGTCGAGATGCATCTTGAGAAGACTCCCAACCAGTACTTGCAGTG 97499
Query 280352 GCGCTATGC 280360
|||||| ||
Sbjct 97500 GCGCTACGC 97508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027832572699961
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |