Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq311 96.9 7e-15 seq289 96.9 7e-15 >seq311 Length=547424 Score = 96.9 bits (106), Expect = 7e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||||||||| || ||||| || || || ||| ||||| | ||| | | || Sbjct 150890 CTCACTCTCGCATGCGTGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCTGCCT 150831 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||||| ||| ||| |||||||||| ||||||||||||||||| || ||||| Sbjct 150830 GCTCT-TGGCAACGCCCCCACTTGATCGTTCTTGACGAGCCTACCAACTACCTTGACCGT 150772 Query 280821 GA 280822 || Sbjct 150771 GA 150770 >seq289 Length=600364 Score = 96.9 bits (106), Expect = 7e-15 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 280176 ATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGA----C 280231 ||||| ||||| ||||| || ||||| || || ||||| |||| ||||||||| | Sbjct 97324 ATTGGCCCCAACGGTGCTGGCAAGTCCACTCTCATCAAGATCCTCACTGGCGAGGTCATC 97383 Query 280232 CCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCA 280291 || || | || |||| |||||| |||||| |||| || | |||| | || Sbjct 97384 CCCAGCACCGGAAAGGTCGA----GAAGCACCCCAACTTGCGTATCGGTTACATTAAGCA 97439 Query 280292 GCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTG 280351 |||||| || | ||| |||||| || || || | |||||| ||||| ||| | ||||| Sbjct 97440 GCACGCCCTCGAGCACGTCGAGATGCATCTTGAGAAGACTCCCAACCAGTACTTGCAGTG 97499 Query 280352 GCGCTATGC 280360 |||||| || Sbjct 97500 GCGCTACGC 97508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832572699961