Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq57 167 4e-36 seq6 149 1e-30 seq311 136 7e-27 seq179 132 9e-26 seq259 129 1e-24 seq289 102 2e-16 >seq57 Length=484889 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || || ||| Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | || |||||||| || Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | |||||| ||||||||||| | || || || Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 315746 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||||||||| |||||||| || Sbjct 315745 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 315696 >seq6 Length=179136 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| || || ||||| || ||||| Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| |||||||| || || | || ||||| || ||| Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| || |||||||| || | || || || Sbjct 30492 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACC 30433 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || |||||||||||||||| Sbjct 30432 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 30396 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | || | || || || ||||| || || ||||||||||| || Sbjct 30840 CCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGAC 30781 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | || |||||||| || Sbjct 30780 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 30721 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | |||||| || |||||||||| ||||| || Sbjct 30720 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACC 30661 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || || ||||||||||| || ||||| Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || | ||| | || | ||| ||||| || || || || ||||| |||||| Sbjct 31068 CCACCACGCAAGCGGAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTC 31009 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| || ||||| || ||||| ||||| | || ||||| ||||| Sbjct 31008 AAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGG 30949 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||| ||| || || ||||| | || || ||| Sbjct 30948 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACT 30889 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| || | ||||||||||| |||||||| Sbjct 30888 TCTAACGTGATTGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || || ||||| || || || || || ||||| Sbjct 30328 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAA 30269 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || || | |||||||| || || Sbjct 30268 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGG 30209 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | ||||||| || || || || | ||||| || Sbjct 30208 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACC 30149 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| || || |||| Sbjct 30148 TCAAGAGTGATGGTCTTGCCGGTGA 30124 >seq311 Length=547424 Score = 136 bits (150), Expect = 7e-27 Identities = 664/1038 (64%), Gaps = 44/1038 (4%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| |||||| |||||| |||||| || || ||| |||||| Sbjct 151283 CGCCACTGGATGTACTCAGAGGGGGTGCTGTCCAAGTGGTTATCGATGTGGGCGAAAGCG 151342 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099 ||||| | ||| || || || ||||| |||| | | | | | || || Sbjct 151343 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAACGGTGGGG 151402 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || || || |||||||| || ||||| || || | |||||| ||||| ||||| || || Sbjct 151403 ATGAGC-TCACCGGTGAGAACGTTGATAAGGGTCGACTTGCCGGCACCGTTGGGACCGAT 151461 Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG- 225216 || |||| ||||| || | ||| ||| || | || | |||||| || Sbjct 151462 GACAGCAATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTCGG---AGATCTGGGGC 151516 Query 225217 --GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 || || |||| |||| || | ||||||| ||||| | Sbjct 151517 TTGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAGA------ATGGCCTTG 151570 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 151571 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCCATCTCGGAG 151630 Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 || || |||||||| || || |||| ||| ||||| | ||||| Sbjct 151631 TCGGAGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTGAGGTTA 151690 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || ||| | | ||||||| | || |||| || || || ||| | ||| || Sbjct 151691 CCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTT 151746 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503 ||| ||||| |||||||||||||| || |||||||| | || | | || | | || Sbjct 151747 GTCGAGGAAACCAGAGTCGTGGGAGACGATGATGGAAGTGCAAG---GGGAGTTCAT-GA 151802 Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 ||| || | |||||| ||||| | ||||||| ||||| ||||| ||||| ||| Sbjct 151803 GGTA-GTCCTCGAGCCACTTAACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGTCGAGA 151861 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||| || || | | | || || ||| || |||| || |||||| ||||| || Sbjct 151862 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCAAAGAGCCAACTTCATCTTCCAACCA 151921 Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682 ||||| |||| ||| | | | | || ||| |||||| |||| |||| Sbjct 151922 CCGGAGAGGGCAGAGATCTCACCCTTCACCATGGCCTCGGTGAAGCCGAACTCGTTGAGC 151981 Query 225683 GT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738 | || || | ||| ||||| || | | ||||| | | | | | Sbjct 151982 TTGGCCTCGACATCAGGCT-GGGAGGTCTCGACACCGGCATCAGCAAGCTTCTTCATGGT 152040 Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798 | ||| |||||| || | ||| | ||| | |||||| || ||| | || || Sbjct 152041 CCACTCAATGGTGGTCATCTCAGTATCAGCGGAGTCCAGGTCGTGCTCGACGAAGACGGT 152100 Query 225799 CCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858 | || || || | |||||| ||||| | ||| | || || ||||| | || Sbjct 152101 CTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAG 152160 Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918 ||| |||||| | |||||||||||| ||| ||||| | | || ||||||| Sbjct 152161 AGTAGACTTGCCGGAACCGTTGGGACCGCAGAGACCGTAGCGCTGACCACGCTTGAGACG 152220 Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 |||| | || ||| || || |||||| |||| |||||||||||||| ||| | ||| Sbjct 152221 GAGGTGGGTCTGGTTAAGAAGAATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCA 152280 Query 225979 CAGGTCCTCACCCTCCTC 225996 ||||||||||||||||| Sbjct 152281 AAGGTCCTCACCCTCCTC 152298 >seq179 Length=397792 Score = 132 bits (146), Expect = 9e-26 Identities = 353/531 (66%), Gaps = 19/531 (4%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||||||||| || | || || |||||||||||||| ||| || ||||| Sbjct 381273 ACACCAGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGG 381214 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGGGTAACC 10054 |||||| ||||||||| || |||||||| | | | | || |||| || || Sbjct 381213 GAAATGTTCTCCATGAAATCGAAGGGGTTG--GAAGACTTGTAGAC--CTTGTCGTTGCC 381158 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 || || || | |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 381157 AAGAGCGACCAAGAGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTT 381098 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | | ||| || | || || | ||| |||| || | |||||| Sbjct 381097 CATGCCGAGGAGAGCGCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGC 381038 Query 10175 TTCCTCGACGATGCTCT---TTACCA-CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || | | |||| || | ||| | | ||| | | | || ||| | || | Sbjct 381037 ATCGACAATGATGTCCTCAATAACCTGCTTGTTGGGGCGG----TGCTTGAGGTGAGAGT 380982 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 ||| || |||| | ||| |||||||||||||| ||||| ||||||||| | Sbjct 380981 ACAATAGGCAGGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGA 380922 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 | |||||| |||||||| || || || ||||||||||||| | ||||| ||| Sbjct 380921 AGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGC 380862 Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTCG 10409 ||| | | |||||| || | |||| || || |||| |||||||| | | || Sbjct 380861 TGAAGAAGATACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCT 380802 Query 10410 CG-CG-AAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGA 10458 || || | ||||| ||||||| | |||||||| | | ||| |||| Sbjct 380801 CGTCGCTGATCCATTTCAAGGCCCAGTCGGCCTTCTTGCGAATGGCGGGGA 380751 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| | || ||||| ||| | || |||||| |||||||||| ||||||| Sbjct 380536 AGGTTCTCATTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAG 380477 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742 | |||||||||||| | || | |||||| | ||||| | || | | | Sbjct 380476 TACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATC 380417 Query 10743 TCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786 ||||| |||||||||||| ||| ||||||||||||||||||| Sbjct 380416 TCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTG 380373 >seq259 Length=323629 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| ||||||||||| || | || || || | |||||| || ||||| || Sbjct 46417 TTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 46358 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 46357 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 46298 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||| ||||| || ||||| |||||||| ||||| Sbjct 46297 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 46239 >seq289 Length=600364 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| |||||||| |||||||| || ||||| | | | | || | || |||||| Sbjct 97035 GTCGAGGAAGCCGGAGTCGTGAGAAACAATCAAGCTGGTGATGTCGGGGTGGGTCTTGAG 96976 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| || | |||| || |||| |||||| |||||||||||||| | Sbjct 96975 GTAGTTCTCGAGCCAAGCAATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAA 96916 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||||| ||| || | | || ||||| || | | || ||||||||| ||||| || || Sbjct 96915 CAGGACGTCGGCGCCCTTCAGCATGGCACGAGCCAAAGCCAGCTTCATCTTCCAACCTCC 96856 Query 225625 GGACAGGGAGCCGA 225638 ||| || ||||||| Sbjct 96855 GGAAAGAGAGCCGA 96842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618701990120