Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq57 167 4e-36
seq6 149 1e-30
seq311 136 7e-27
seq179 132 9e-26
seq259 129 1e-24
seq289 102 2e-16
>seq57
Length=484889
Score = 167 bits (184), Expect = 4e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || || |||
Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | || |||||||| ||
Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| | |||||| ||||||||||| | || || ||
Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 315746
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || ||||| |||||||||||||| |||||||| ||
Sbjct 315745 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 315696
>seq6
Length=179136
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| ||||| ||||| || || ||||| || |||||
Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| |||||||| || || | || ||||| || |||
Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| || |||||||| || | || || ||
Sbjct 30492 ATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACC 30433
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|| | ||||||||| || || ||||||||||||||||
Sbjct 30432 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 30396
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||| | || | || || || ||||| || || ||||||||||| ||
Sbjct 30840 CCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGAC 30781
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | || |||||||| ||
Sbjct 30780 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 30721
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||| | |||||| || |||||||||| ||||| ||
Sbjct 30720 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACC 30661
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || || || ||||||||||| || |||||
Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || | ||| | || | ||| ||||| || || || || ||||| ||||||
Sbjct 31068 CCACCACGCAAGCGGAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTC 31009
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || ||||| || ||||| || ||||| ||||| | || ||||| |||||
Sbjct 31008 AAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGG 30949
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||| ||| || || ||||| | || || |||
Sbjct 30948 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACT 30889
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| || ||||| || | ||||||||||| ||||||||
Sbjct 30888 TCTAACGTGATTGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 131 bits (144), Expect = 3e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | |||||||| || || ||||| || || || || || |||||
Sbjct 30328 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAA 30269
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | |||||||| || ||
Sbjct 30268 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGG 30209
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| |||||||| | ||||||| || || || || | ||||| ||
Sbjct 30208 ATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACC 30149
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| || || ||||
Sbjct 30148 TCAAGAGTGATGGTCTTGCCGGTGA 30124
>seq311
Length=547424
Score = 136 bits (150), Expect = 7e-27
Identities = 664/1038 (64%), Gaps = 44/1038 (4%)
Strand=Plus/Plus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| |||||| |||||| |||||| || || ||| ||||||
Sbjct 151283 CGCCACTGGATGTACTCAGAGGGGGTGCTGTCCAAGTGGTTATCGATGTGGGCGAAAGCG 151342
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | | || ||
Sbjct 151343 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAACGGTGGGG 151402
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| || || |||||||| || ||||| || || | |||||| ||||| ||||| || ||
Sbjct 151403 ATGAGC-TCACCGGTGAGAACGTTGATAAGGGTCGACTTGCCGGCACCGTTGGGACCGAT 151461
Query 225160 CACGCCAATCCGGGAT--GACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG- 225216
|| |||| ||||| || | ||| ||| || | || | |||||| ||
Sbjct 151462 GACAGCAATACGGGAGCCGAGAGAGCA--CTGGAAGGAGATGTCGG---AGATCTGGGGC 151516
Query 225217 --GCCAGTTT---GGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265
|| || |||| |||| || | ||||||| ||||| |
Sbjct 151517 TTGCTGGTACCGGGGTACTGGAAGGACATCTTGCTGGCACGCAGA------ATGGCCTTG 151570
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325
|||||| | | |||||| ||||| |||||||||||||| ||| || | | |
Sbjct 151571 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCCATCTCGGAG 151630
Query 225326 TCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385
|| || |||||||| || || |||| ||| ||||| | |||||
Sbjct 151631 TCGGAGAGCTCGTAGTAGGACTTGGCAGCGGGGTTCTTCTTGACGAACTCCTTGAGGTTA 151690
Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444
|| ||| | | ||||||| | || |||| || || || ||| | ||| ||
Sbjct 151691 CCACGGTAGCGCTTAAGCTTGAAGCGCT---CGTAGTGGACGATGTGCTG-GCAGACGTT 151746
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCTTGA 225503
||| ||||| |||||||||||||| || |||||||| | || | | || | | ||
Sbjct 151747 GTCGAGGAAACCAGAGTCGTGGGAGACGATGATGGAAGTGCAAG---GGGAGTTCAT-GA 151802
Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
||| || | |||||| ||||| | ||||||| ||||| ||||| ||||| |||
Sbjct 151803 GGTA-GTCCTCGAGCCACTTAACGTTCTTCACGTCCAAATGGTTGGTAGGCTCGTCGAGA 151861
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
||||| || || | | | || || ||| || |||| || |||||| ||||| ||
Sbjct 151862 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCAAAGAGCCAACTTCATCTTCCAACCA 151921
Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682
||||| |||| ||| | | | | || ||| |||||| |||| ||||
Sbjct 151922 CCGGAGAGGGCAGAGATCTCACCCTTCACCATGGCCTCGGTGAAGCCGAACTCGTTGAGC 151981
Query 225683 GT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGTCGGACGAGAG 225738
| || || | ||| ||||| || | | ||||| | | | | |
Sbjct 151982 TTGGCCTCGACATCAGGCT-GGGAGGTCTCGACACCGGCATCAGCAAGCTTCTTCATGGT 152040
Query 225739 GTAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGT 225798
| ||| |||||| || | ||| | ||| | |||||| || ||| | || ||
Sbjct 152041 CCACTCAATGGTGGTCATCTCAGTATCAGCGGAGTCCAGGTCGTGCTCGACGAAGACGGT 152100
Query 225799 CCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858
| || || || | |||||| ||||| | ||| | || || ||||| | ||
Sbjct 152101 CTTGACCTCGGACTGCTTGGGGAAACCCTCGACCTGCTCGTTGTTGATGGCACGCATGAG 152160
Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918
||| |||||| | |||||||||||| ||| ||||| | | || |||||||
Sbjct 152161 AGTAGACTTGCCGGAACCGTTGGGACCGCAGAGACCGTAGCGCTGACCACGCTTGAGACG 152220
Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978
|||| | || ||| || || |||||| |||| |||||||||||||| ||| | |||
Sbjct 152221 GAGGTGGGTCTGGTTAAGAAGAATCTTGGCACCGTAGGCAAGGGAGAAGGTGCAGTTGCA 152280
Query 225979 CAGGTCCTCACCCTCCTC 225996
|||||||||||||||||
Sbjct 152281 AAGGTCCTCACCCTCCTC 152298
>seq179
Length=397792
Score = 132 bits (146), Expect = 9e-26
Identities = 353/531 (66%), Gaps = 19/531 (4%)
Strand=Plus/Minus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
|| || ||||||||||| || | || || |||||||||||||| ||| || |||||
Sbjct 381273 ACACCAGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGG 381214
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC----AAACTGCTTGGGGTAACC 10054
|||||| ||||||||| || |||||||| | | | | || |||| || ||
Sbjct 381213 GAAATGTTCTCCATGAAATCGAAGGGGTTG--GAAGACTTGTAGAC--CTTGTCGTTGCC 381158
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
|| || || | |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 381157 AAGAGCGACCAAGAGACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTT 381098
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | | ||| || | || || | ||| |||| || | ||||||
Sbjct 381097 CATGCCGAGGAGAGCGCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGC 381038
Query 10175 TTCCTCGACGATGCTCT---TTACCA-CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
|| | | |||| || | ||| | | ||| | | | || ||| | || |
Sbjct 381037 ATCGACAATGATGTCCTCAATAACCTGCTTGTTGGGGCGG----TGCTTGAGGTGAGAGT 380982
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
||| || |||| | ||| |||||||||||||| ||||| ||||||||| |
Sbjct 380981 ACAATAGGCAGGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGA 380922
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
| |||||| |||||||| || || || ||||||||||||| | ||||| |||
Sbjct 380921 AGGTCAGACCAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGC 380862
Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTCG 10409
||| | | |||||| || | |||| || || |||| |||||||| | | ||
Sbjct 380861 TGAAGAAGATACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCT 380802
Query 10410 CG-CG-AAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGA 10458
|| || | ||||| ||||||| | |||||||| | | ||| ||||
Sbjct 380801 CGTCGCTGATCCATTTCAAGGCCCAGTCGGCCTTCTTGCGAATGGCGGGGA 380751
Score = 93.3 bits (102), Expect = 8e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682
|||||||| | || ||||| ||| | || |||||| |||||||||| |||||||
Sbjct 380536 AGGTTCTCATTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAG 380477
Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACC 10742
| |||||||||||| | || | |||||| | ||||| | || | | |
Sbjct 380476 TACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATC 380417
Query 10743 TCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTG 10786
||||| |||||||||||| ||| |||||||||||||||||||
Sbjct 380416 TCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTG 380373
>seq259
Length=323629
Score = 129 bits (142), Expect = 1e-24
Identities = 136/179 (76%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| ||||||||||| || | || || || | |||||| || ||||| ||
Sbjct 46417 TTCTGGATGTTGTAATCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATC 46358
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | |||||||| || |||||||| |||||||| || ||||| | |||||| |||
Sbjct 46357 AAGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 46298
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| ||||| | || || || || | ||| ||||| || ||||| |||||||| |||||
Sbjct 46297 ATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAA 46239
>seq289
Length=600364
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| |||||||| |||||||| || ||||| | | | | || | || ||||||
Sbjct 97035 GTCGAGGAAGCCGGAGTCGTGAGAAACAATCAAGCTGGTGATGTCGGGGTGGGTCTTGAG 96976
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| | |||||| || | |||| || |||| |||||| |||||||||||||| |
Sbjct 96975 GTAGTTCTCGAGCCAAGCAATGTTGGCAACATCCAAGTGGTTAGTAGGTTCGTCCAGCAA 96916
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||||| ||| || | | || ||||| || | | || ||||||||| ||||| || ||
Sbjct 96915 CAGGACGTCGGCGCCCTTCAGCATGGCACGAGCCAAAGCCAGCTTCATCTTCCAACCTCC 96856
Query 225625 GGACAGGGAGCCGA 225638
||| || |||||||
Sbjct 96855 GGAAAGAGAGCCGA 96842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921618701990120
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