Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 9e-22
>seq6
Length=179136
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||||||||| || ||||||||||||||||||| || || ||||| | ||| || ||
Sbjct 31039 CGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCC 30980
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
|||| | ||||||||||| ||||| || || ||||| || ||||| |||||| ||
Sbjct 30979 AGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTGGACTT 30920
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| ||||||| || ||||| || | || | || || ||||||| ||
Sbjct 30919 CACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGT 30860
Query 114365 TTTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 30859 CTTGACGAAGATCTGCAT 30842
Score = 114 bits (126), Expect = 1e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||||||||| || | | ||| || || | |||||| || || ||||||||||| |||
Sbjct 30615 ATACCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCG 30556
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| ||| || |||||||| || || ||| |||| |||||||| ||||| ||
Sbjct 30555 GACAGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGG 30496
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| |||||| || | | || | ||| || | || ||
Sbjct 30495 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCA 30436
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | ||| | || |||||||| || || || ||
Sbjct 30435 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 30398
Score = 102 bits (112), Expect = 7e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | ||| || || | ||||| || || ||||| ||||| |||
Sbjct 30331 ATACCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCG 30272
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || ||||| || || |||||| |||| |||||||||||||| ||
Sbjct 30271 GAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGG 30212
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||| ||||| |||||| || | | |||| || |||| |||||||
Sbjct 30211 GGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCG 30152
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | || | || ||||||||
Sbjct 30151 ACCTCAAGAGTGATGGTCTTGCCGGT 30126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420132756355452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |