Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq49 358 1e-93 seq179 246 6e-60 >seq49 Length=112291 Score = 358 bits (396), Expect = 1e-93 Identities = 1155/1763 (66%), Gaps = 71/1763 (4%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGA- 243932 || |||||||||||| |||||||| ||||| | || || || ||||| | | Sbjct 49720 GATGTTGAGGGACTGTGACTGGTCGATGAAGGCACCGCGGTCGGCAGCCATCTGCACAAC 49779 Query 243933 GGTCCT-TCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGG--GGA 243989 ||| | | ||||| || || ||| |||||||| | | ||| | ||||| ||| Sbjct 49780 GGTACGCTGGGAGATTTCCCAGACG--GTCTTGTACAGAGCCTTTAC---CTCGGCAGGA 49834 Query 243990 ACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCG 244048 | | | |||||||| || || || || | | |||||| || | |||| ||| Sbjct 49835 ATGTTGGGGATGTTCTGGACGGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCA 49894 Query 244049 TTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCT 244108 ||||| ||||| | | || | | | ||| ||| || || || |||||| Sbjct 49895 GACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGGGGTTGACGACTTGGAACTCT 49954 Query 244109 CCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTG 244168 || | || || || |||||||| | |||| | || |||| || ||| ||||| Sbjct 49955 CCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTG 50014 Query 244169 CCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACG 244228 |||| ||||||| ||| ||||| |||||||| | || ||||||||||| | || Sbjct 50015 CCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACA 50074 Query 244229 CCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCC---AGTCCCACATGCCCGAGAGGTCC 244285 || ||| || ||| ||| ||| ||| ||||||| || || | ||||| Sbjct 50075 CCATGCTCCTTGAT-------CTG--CTCCTTCAGAGAGTCCCA-ATCCC--AAAGGTCA 50122 Query 244286 TCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCG 244345 | | |||| ||||||||| |||| || | |||| | || ||||||| Sbjct 50123 GAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGAGAGCCCTCG 50182 Query 244346 TAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA-CAGCTCTCGTCGAGGGCGGCGTA 244404 || || | ||||| ||| || || ||||| || | | | | ||| || || || | Sbjct 50183 TACGTGGAGTAGGTACCTTCCTCCTTGGCCAACTGAACCGACATAGTC-AGAGCAGCATG 50241 Query 244405 GTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGG 244462 ||| |||||||| |||||| ||||||| | ||| ||||||| | | || | ||| || Sbjct 50242 GTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCT--CAGGAGATTCGAATGGC 50299 Query 244463 ATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGT 244522 |||| | | ||| | ||||| || ||||| || || | |||||||| | ||| Sbjct 50300 ATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATGGGACGGTGA 50359 Query 244523 CGCTTGTTGG-AGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTT 244581 ||| ||||| | || ||| || || |||||||| |||| | || || | |||||| Sbjct 50360 CGCATGTTGCTATTGCG-GGCCTCAGGAACGGGGTAGTGGTTGACATCAATGATCTTGTT 50418 Query 244582 GAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGG 244641 | |||||| || | | ||| || ||| ||| |||||||| | Sbjct 50419 CAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTAGAC------ 50472 Query 244642 ATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGAC 244701 | ||||| | | || | | ||| | | ||||||| |||| ||||||||| Sbjct 50473 ACCCTCGTTG-TAGTCAACG----AAAGTAGGA-AGGGCGAGAGAAGCCAAGTTGCAGAC 50526 Query 244702 GGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGAT 244761 || ||||| || | | | ||||| | ||||| ||||||||||| || ||| Sbjct 50527 AGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGAT 50586 Query 244762 GGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 |||||| |||| || || ||| |||| ||| ||| |||||||| |||||||| || Sbjct 50587 GGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGG 50646 Query 244822 CCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT 244881 || ||||| ||| || |||| | || ||| || | | ||||||| || Sbjct 50647 GTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGCCTTGATGGT 50706 Query 244882 CCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCA 244941 | ||||| |||||||||| |||||| ||||| |||||||||||| ||| | Sbjct 50707 CTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTA 50766 Query 244942 GACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTT 245001 | || | || ||||||||| || |||||||| |||| || || | || Sbjct 50767 GCAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTC 50826 Query 245002 GACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTG 245061 ||| |||| |||||| || ||||||||||||||||| |||| ||||| | | | Sbjct 50827 GACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGAC 50886 Query 245062 CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGG 245121 ||| ||| ||| |||||| | ||| |||| || |||||||| ||| |||||||||| Sbjct 50887 CTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTCAAAGACATCGGCGTGCCAGGG 50946 Query 245122 CTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTC 245181 ||| | ||| | |||| ||| || || ||||| || || || || || | | | | Sbjct 50947 CTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGA----CGTAGC 51002 Query 245182 GAG-CGCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGC 245237 ||| || | ||||||| || || | || | | ||||| ||| ||||||||||| Sbjct 51003 GAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGC 51062 Query 245238 CCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGATGGACATGCCTAGTCCGCCGG 245294 | || |||| ||| || | | || ||| | | || | || | || |||| Sbjct 51063 CGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTG---AGACCAATGCCACCGG 51119 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 | ||||||||| | ||||||| |||||| ||||| || ||||| ||| ||| Sbjct 51120 CCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTT 51179 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACA 245414 |||||||| || || ||||| || ||||||||| || ||| | | | |||||| | Sbjct 51180 CCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGGGGTACCGGCGTTGAAGA 51239 Query 245415 GAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGA-GCAGA 245473 | ||||| ||||||||| ||| | ||| || | || ||| |||| || | | Sbjct 51240 GTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGC 51299 Query 245474 GCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCA--CCTCATGAGGGTGTGCTGGGGCG 245531 || || | |||||| || || ||| | ||| | ||||| ||||||| || Sbjct 51300 GC-TCAACGTTGTCACCCCAGA--TGCCGACTGCAACACGCATGATCATGTGCTGCGGTC 51356 Query 245532 TCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACC 245588 ||||| || || ||| | |||||| | ||| || | ||| || |||||||| | Sbjct 51357 TCTCGGCAATCTTGCCGTCGAG---CTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGC 51413 Query 245589 CAAAGTACGAGTAGCCAAAGTCG 245611 | ||||| |||| |||||| Sbjct 51414 CGAAGTATTGGTAGTTGAAGTCG 51436 >seq179 Length=397792 Score = 246 bits (272), Expect = 6e-60 Identities = 595/901 (66%), Gaps = 60/901 (7%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| ||||||||||||||||||||| ||| Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAA 42416 ||||||| || |||| | || || || | || |||| ||| || Sbjct 380427 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCC 380486 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || |||||||| |||||||||||||| | | Sbjct 380487 CACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGAGCGC 380546 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| ||||| || ||||||||||| |||||||| || Sbjct 380547 TTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 380606 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||||||| ||| | ||| || |||| |||||| ||| || | Sbjct 380607 GAGAACATTCACTCTGAGACCTACTCGCTACTCATCGACACCTACATCAAGGAGCCTGCG 380666 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGAC------GATGCC---------------- 42634 |||| | || || || ||||| || || | || | Sbjct 380667 CAGCGCACGTACCTCTTTAACGCCATTGACACTAGTATGTTGACATGACATGTACTGTGA 380726 Query 42635 CTGCATC---AA--------GAAG-----------------AAGGCGGACTGGGCGCTCA 42666 |||||| || | || ||||| |||||||| | | Sbjct 380727 ATGCATCGCTAACTCGCATTGCAGTCCCCGCCATTCGCAAGAAGGCCGACTGGGCCTTGA 380786 Query 42667 ACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTC 42725 | |||||| || | | || | || | |||| | || | ||||| ||||| |||| || Sbjct 380787 AATGGATC-AGCGACGAGAGCTCATCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTT 380845 Query 42726 GAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTC 42784 ||||| ||||||||| || || ||||||||||| |||||||||||| || ||| || Sbjct 380846 GAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTC 380905 Query 42785 GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGA 42844 ||||| || || |||||||| ||||| |||||| | |||||||| ||||| | || Sbjct 380906 -ATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTGCACACTGA 380964 Query 42845 CTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCG 42904 |||||||||||| ||| ||| ||||||| |||| ||| ||| || | Sbjct 380965 CTTTGCCTGCCTATTGTACTC---TCACCTCAAGCACCGCCCCAACAAGCAGGTTATTGA 381021 Query 42905 GGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 || |||||| || || || |||| ||| |||||||| | || || | ||||| Sbjct 381022 GGACATCATTGTCGATGCGGTCAAGATTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTG 381081 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 | || ||||||||||| | || | ||| ||||||| ||| ||| || |||| Sbjct 381082 CGCTCTCCTCGGCATGAACTCCAACTTGATGAAGCAGTACATTGAGTTCGTTGCTGACCG 381141 Query 43025 TCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 |||| || | | || | | ||||||| | | ||||||||| || || Sbjct 381142 TCTCTTGGTCGCTCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTCGATTTCAT 381201 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||| || | | || ||||||||||| ||||||||||| || ||||||||||| Sbjct 381202 GGAGAACATTTCCCTCGGCGGAAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCA 381261 Query 43145 G 43145 | Sbjct 381262 G 381262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335410838960