Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq57 127 5e-24
seq6 127 5e-24
seq179 93.3 1e-13
>seq57
Length=484889
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || || | ||| || || ||||| || ||||| | |
Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || ||||| ||||||||||| ||||| || |||
Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||||||||| || | || || || || || | ||| ||| || ||
Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 315746
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
|| || ||||| ||||| || ||||| ||||||||||| |||||||| ||
Sbjct 315745 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGAT 315696
>seq6
Length=179136
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || | | || || || |||| ||| ||| || || || || || |||
Sbjct 31071 TGGCCACCACGCAAGCGGAGGACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCG 31012
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| ||||| |||||||| ||||| || || ||||| || |||||||| || | |
Sbjct 31011 CTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGT 30952
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || ||||| || || | |||||||| || || | ||| || ||
Sbjct 30951 GGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCG 30892
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | |||||| ||||| ||||||| ||||||||||| ||||||||
Sbjct 30891 ACTTCTAACGTGATTGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| |||||||| | || || || || || ||||| || |
Sbjct 30840 CCACCGCGGAGGCGAAGGACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGAC 30781
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || ||||| || ||||||| |||||| || |||
Sbjct 30780 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGG 30721
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || || ||||| |||| || || || || || | || ||||| ||
Sbjct 30720 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACC 30661
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| |||||||| || ||||||||||||||||| || |||||
Sbjct 30660 TCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 100 bits (110), Expect = 7e-16
Identities = 125/170 (74%), Gaps = 6/170 (4%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || ||||| ||||||| || || || ||||| || | || || || ||||||
Sbjct 30292 TCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 30233
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| ||||||||||| ||| ||||| ||||| || ||||| || || | || |||
Sbjct 30232 ATAAGACGCTGTTG---GTCTGGGGGGATGCCTTCCTTGTCCTGAATCTTGGACTTGACG 30176
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449
|| || |||| |||| ||||| || || || ||||| ||||| |||||
Sbjct 30175 TTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTTGCCGGT 30126
>seq179
Length=397792
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | ||| ||| | || || || | |||| ||||| || | | |||||
Sbjct 381056 GAGTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACTTGATGAAG 381115
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
|| || || || ||||| ||||| ||| |||| || || || | || || || |||
Sbjct 381116 CAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTCGCTCTTGGCAACGACAAGGTCTAC 381175
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
|| || || ||||||| || ||||| ||||| |||| |||||||| ||||||
Sbjct 381176 AAGTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGAAAGACCAACTTC 381235
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324
||||| |||||||| |||||| ||
Sbjct 381236 TTCGAGAAGCGTGTTGCCGACTACCA 381261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179649548302638
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |