Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq49 152 6e-32 seq179 116 4e-21 seq290 86.0 7e-12 >seq49 Length=112291 Score = 152 bits (168), Expect = 6e-32 Identities = 844/1339 (63%), Gaps = 35/1339 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || |||| ||| || || || |||||||| ||||| ||||| || || | |||||| Sbjct 49976 TAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAG 50035 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || |||||||| || | ||| || ||||| |||| ||| | ||| | || | ||| Sbjct 50036 GCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCC 50095 Query 114062 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 || || | |||||| || | | | || | || | | |||||| || |||||| Sbjct 50096 TTCAGAGAGTCCCAATCCCAAAGGTCAGAG--GGCTTGACATTCCACATGTCGTACTGGA 50153 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 |||| || || || || || ||||| | || ||| | || || ||| |||| Sbjct 50154 GGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCA 50213 Query 114180 ATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 114237 | | || | | | | || || || || || || |||||||| || || | Sbjct 50214 ACT--GAACCGACATAGTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAG 50271 Query 114238 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 114297 | |||||| || || || | | || | || |||| || ||||| Sbjct 50272 GTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACC 50331 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---AC 114354 |||||||| || || || || || || | ||| || || || || ||| || Sbjct 50332 CTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCGGGC---CTCAGGAAC 50388 Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414 ||| || || ||| || | | | || | || ||| |||| |||| || Sbjct 50389 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTC 50448 Query 114415 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGC 114471 ||||||||| | | | || | | | ||| | | | || | |||||||||| Sbjct 50449 ATGAAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGC 50505 Query 114472 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 114531 || || |||| || || |||| | |||||| | |||||| || || || || Sbjct 50506 GAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGT 50565 Query 114532 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 114591 || | || || || |||||||| | |||||| || || ||| ||| || Sbjct 50566 GCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGC 50625 Query 114592 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651 |||||||||||||||| | || | || ||||| || || | || |||||| || | ||| Sbjct 50626 ATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCA 50685 Query 114652 GA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGT 114707 | | || | | || | ||| ||| | | |||||| ||||||||| || Sbjct 50686 AAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGT 50741 Query 114708 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 114767 | | ||| || ||||| || || | || | || || || || || || || | Sbjct 50742 ACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACA 50801 Query 114768 AGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAG 114827 ||| | ||| | | | || ||| || | ||||||||| || || ||||||||||| | Sbjct 50802 TGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGG 50861 Query 114828 CTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887 | ||| || || ||| || | || || | || || || |||| |||| | Sbjct 50862 CAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGA 50921 Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944 | || | || ||| |||||||| || || ||||| | |||| | || ||| | Sbjct 50922 ACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTAT 50981 Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004 |||| | || | || || | || ||| ||| || || |||||||| || |||| | Sbjct 50982 TACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTC 51041 Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064 | | || ||| || || || |||| || | |||| | || ||| || Sbjct 51042 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGT 51101 Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124 | |||||| || || ||| ||| ||||| ||||| | |||| || |||||| Sbjct 51102 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGA 51161 Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184 | || || || ||||| |||| | ||| |||||||| |||| || | | Sbjct 51162 TACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAG 51221 Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 115242 | ||||| ||||||||||| || || | |||||| ||| | | |||| ||||||| Sbjct 51222 GGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATCAA 51279 Query 115243 ATCGTAGGTCTCCAAGACG 115261 | ||||||||| | |||| Sbjct 51280 GTTGTAGGTCTCGATGACG 51298 >seq179 Length=397792 Score = 116 bits (128), Expect = 4e-21 Identities = 304/461 (66%), Gaps = 22/461 (5%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| ||||||||||||||||| ||||| ||| | | | || |||||||| Sbjct 381259 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCAT 381200 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 ||||| || ||||| || || | | |||| | || | | | |||| Sbjct 381199 GAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AAGAGA 381142 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | ||| |||||||||||| |||| | |||||||| |||| ||| Sbjct 381141 CGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCG 381082 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || | |||| ||| |||||| | || || || | |||| | Sbjct 381081 CAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCC 381022 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGA----AGAGTTCCAC-----G 126046 | ||| || | | | | || | ||||| ||||| | | | Sbjct 381021 TCAATAA--------CCTGCTTGTTGGGGCGGTG-CTTGAGGTGAGAGTACAATAGGCAG 380971 Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || |||||||| || || |||||| ||| || Sbjct 380970 GCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 380911 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | ||||||||| | || | ||| ||||||||| Sbjct 380910 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATA 380851 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 ||||| ||| ||||| |||| ||||||| || ||||| Sbjct 380850 CCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA 380810 >seq290 Length=261601 Score = 86.0 bits (94), Expect = 7e-12 Identities = 326/501 (65%), Gaps = 17/501 (3%) Strand=Plus/Plus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 || |||||||| || || | || || | ||| ||||| || | ||| || | ||| Sbjct 140179 TCGAAGCGACCGGGACGCATCAGTGCCTTGTCGAGGATGTCGGCTCTGTTGGTGCCAGCG 140238 Query 10850 ATGACAACGATGCCCG-TCTCGT-TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907 | ||||| | || | ||| | | | || || |||||||| |||| || || || | Sbjct 140239 AGCACAACCA--CCTGCTCTTGGGTGTTGAAACCGTCCATCTCGGTCAGGATCTGGTTCA 140296 Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTG-CTTACCG 10963 || ||||| || ||||| || ||| | |||| | ||| | | | |||| Sbjct 140297 GAGTGGCCTCGCGCTCGTCATTGCCGCCCATGCGGTTACCCTC-CTGTCTCGACCGACCG 140355 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 | ||| || ||||| || ||||||| ||| || || | | | ||| ||| | |||| Sbjct 140356 ATGGCATCGATTTCGTCAATGAAAATGATGCAGGGGGCACTCTTACGAGCATTTGCAAAC 140415 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGG 11081 | ||||| ||||| | |||||||||||||||||| || || || | || | || | Sbjct 140416 AAGTCTCGCACTCTTGAAGGACCGACACCCACAAACATCTCAACGAACTCGGAACCGCTG 140475 Query 11082 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 | | || ||||| || || || || ||| |||| ||| || |||||||| | Sbjct 140476 ACGCT--GAAAAAGGGCACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTCTTAC 140533 Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTCCAAA 11199 | || || || || || || | |||||||| |||||| | || || || || Sbjct 140534 CGGTTCCTGGAGGTCCGGCCAGGATAGCACCACGAGGGATCTTTGCGCCTAACCTC--TC 140591 Query 11200 GTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGCGTC 11259 | ||||||| || || |||||| |||| || | || ||| || |||| Sbjct 140592 GAAGCGCTCGGGGGTCTTCAGGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTC 140651 Query 11260 GATGCCTTCAACGTCACTGAA 11280 ||||| ||||||| ||||| Sbjct 140652 CATGCCGGCAACGTCGCTGAA 140672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351203118680