Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq49 152 6e-32
seq179 116 4e-21
seq290 86.0 7e-12
>seq49
Length=112291
Score = 152 bits (168), Expect = 6e-32
Identities = 844/1339 (63%), Gaps = 35/1339 (3%)
Strand=Plus/Plus
Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001
|| || |||| ||| || || || |||||||| ||||| ||||| || || | ||||||
Sbjct 49976 TAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAG 50035
Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061
|| || |||||||| || | ||| || ||||| |||| ||| | ||| | || | |||
Sbjct 50036 GCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCC 50095
Query 114062 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119
|| || | |||||| || | | | || | || | | |||||| || ||||||
Sbjct 50096 TTCAGAGAGTCCCAATCCCAAAGGTCAGAG--GGCTTGACATTCCACATGTCGTACTGGA 50153
Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179
|||| || || || || || ||||| | || ||| | || || ||| ||||
Sbjct 50154 GGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCA 50213
Query 114180 ATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 114237
| | || | | | | || || || || || || |||||||| || || |
Sbjct 50214 ACT--GAACCGACATAGTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAG 50271
Query 114238 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 114297
| |||||| || || || | | || | || |||| || |||||
Sbjct 50272 GTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACC 50331
Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---AC 114354
|||||||| || || || || || || | ||| || || || || ||| ||
Sbjct 50332 CTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCGGGC---CTCAGGAAC 50388
Query 114355 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 114414
||| || || ||| || | | | || | || ||| |||| |||| ||
Sbjct 50389 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTC 50448
Query 114415 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGC 114471
||||||||| | | | || | | | ||| | | | || | ||||||||||
Sbjct 50449 ATGAAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGC 50505
Query 114472 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 114531
|| || |||| || || |||| | |||||| | |||||| || || || ||
Sbjct 50506 GAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGT 50565
Query 114532 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 114591
|| | || || || |||||||| | |||||| || || ||| ||| ||
Sbjct 50566 GCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGC 50625
Query 114592 ATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 114651
|||||||||||||||| | || | || ||||| || || | || |||||| || | |||
Sbjct 50626 ATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCA 50685
Query 114652 GA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGT 114707
| | || | | || | ||| ||| | | |||||| ||||||||| ||
Sbjct 50686 AAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGT 50741
Query 114708 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 114767
| | ||| || ||||| || || | || | || || || || || || || |
Sbjct 50742 ACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACA 50801
Query 114768 AGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAG 114827
||| | ||| | | | || ||| || | ||||||||| || || ||||||||||| |
Sbjct 50802 TGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGG 50861
Query 114828 CTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 114887
| ||| || || ||| || | || || | || || || |||| |||| |
Sbjct 50862 CAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGA 50921
Query 114888 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 114944
| || | || ||| |||||||| || || ||||| | |||| | || ||| |
Sbjct 50922 ACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTAT 50981
Query 114945 GACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATAC 115004
|||| | || | || || | || ||| ||| || || |||||||| || |||| |
Sbjct 50982 TACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTC 51041
Query 115005 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCATGGATGT 115064
| | || ||| || || || |||| || | |||| | || ||| ||
Sbjct 51042 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGT 51101
Query 115065 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 115124
| |||||| || || ||| ||| ||||| ||||| | |||| || ||||||
Sbjct 51102 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGA 51161
Query 115125 TCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTG 115184
| || || || ||||| |||| | ||| |||||||| |||| || | |
Sbjct 51162 TACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAG 51221
Query 115185 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTT 115242
| ||||| ||||||||||| || || | |||||| ||| | | |||| |||||||
Sbjct 51222 GGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATCAA 51279
Query 115243 ATCGTAGGTCTCCAAGACG 115261
| ||||||||| | ||||
Sbjct 51280 GTTGTAGGTCTCGATGACG 51298
>seq179
Length=397792
Score = 116 bits (128), Expect = 4e-21
Identities = 304/461 (66%), Gaps = 22/461 (5%)
Strand=Plus/Minus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| |||| ||||||||||||||||| ||||| ||| | | | || ||||||||
Sbjct 381259 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCAT 381200
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
||||| || ||||| || || | | |||| | || | | | ||||
Sbjct 381199 GAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AAGAGA 381142
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| || | ||| |||||||||||| |||| | |||||||| |||| |||
Sbjct 381141 CGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCG 381082
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || || || || | |||| ||| |||||| | || || || | |||| |
Sbjct 381081 CAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCC 381022
Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGA----AGAGTTCCAC-----G 126046
| ||| || | | | | || | ||||| ||||| | | |
Sbjct 381021 TCAATAA--------CCTGCTTGTTGGGGCGGTG-CTTGAGGTGAGAGTACAATAGGCAG 380971
Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106
||||| || ||| || |||||||| || |||||||| || || |||||| ||| ||
Sbjct 380970 GCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 380911
Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166
||||||||||| |||||||| | ||||||||| | || | ||| |||||||||
Sbjct 380910 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATA 380851
Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207
||||| ||| ||||| |||| ||||||| || |||||
Sbjct 380850 CCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA 380810
>seq290
Length=261601
Score = 86.0 bits (94), Expect = 7e-12
Identities = 326/501 (65%), Gaps = 17/501 (3%)
Strand=Plus/Plus
Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849
|| |||||||| || || | || || | ||| ||||| || | ||| || | |||
Sbjct 140179 TCGAAGCGACCGGGACGCATCAGTGCCTTGTCGAGGATGTCGGCTCTGTTGGTGCCAGCG 140238
Query 10850 ATGACAACGATGCCCG-TCTCGT-TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGA 10907
| ||||| | || | ||| | | | || || |||||||| |||| || || || |
Sbjct 140239 AGCACAACCA--CCTGCTCTTGGGTGTTGAAACCGTCCATCTCGGTCAGGATCTGGTTCA 140296
Query 10908 TGGTTTGTTCGCGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTG-CTTACCG 10963
|| ||||| || ||||| || ||| | |||| | ||| | | | ||||
Sbjct 140297 GAGTGGCCTCGCGCTCGTCATTGCCGCCCATGCGGTTACCCTC-CTGTCTCGACCGACCG 140355
Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023
| ||| || ||||| || ||||||| ||| || || | | | ||| ||| | ||||
Sbjct 140356 ATGGCATCGATTTCGTCAATGAAAATGATGCAGGGGGCACTCTTACGAGCATTTGCAAAC 140415
Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CGGCGG 11081
| ||||| ||||| | |||||||||||||||||| || || || | || | || |
Sbjct 140416 AAGTCTCGCACTCTTGAAGGACCGACACCCACAAACATCTCAACGAACTCGGAACCGCTG 140475
Query 11082 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141
| | || ||||| || || || || ||| |||| ||| || |||||||| |
Sbjct 140476 ACGCT--GAAAAAGGGCACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTCTTAC 140533
Query 11142 CCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTCCAAA 11199
| || || || || || || | |||||||| |||||| | || || || ||
Sbjct 140534 CGGTTCCTGGAGGTCCGGCCAGGATAGCACCACGAGGGATCTTTGCGCCTAACCTC--TC 140591
Query 11200 GTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCAGCGTC 11259
| ||||||| || || |||||| |||| || | || ||| || ||||
Sbjct 140592 GAAGCGCTCGGGGGTCTTCAGGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTC 140651
Query 11260 GATGCCTTCAACGTCACTGAA 11280
||||| ||||||| |||||
Sbjct 140652 CATGCCGGCAACGTCGCTGAA 140672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597351203118680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |