Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq57 113 5e-20
seq6 104 3e-17
>seq57
Length=484889
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| |||| || | ||| |||||| || || ||||| || | || || || ||
Sbjct 315913 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCG 315854
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| |||||||| || || ||||||||||||| || | || ||||||
Sbjct 315853 TCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTA 315794
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| | | | |||||| ||| ||||| || | |||||
Sbjct 315793 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 315734
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| |||||||| || ||||| || ||||| |||||
Sbjct 315733 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315699
>seq6
Length=179136
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| || ||||| | ||| || || | || || |||||||| ||||| ||
Sbjct 30805 CTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCAAA 30746
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|| | ||||||||||||| || | || ||||||||| ||| || |||| |
Sbjct 30745 GATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTTCGACTTGACATT 30686
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| ||||| || |||| ||| || || ||||| || || ||||| ||
Sbjct 30685 GTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGTCAGAGTCTTGAC 30626
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 30625 GAAGATTTGCAT 30614
Score = 100 bits (110), Expect = 3e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| ||||| |||||||| || || || |||| || | ||||| ||||||||
Sbjct 31032 TCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGCTTGCCAGCGAAA 30973
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
||||| ||||||||||| | ||| | || |||||||||| ||| | || | | |||
Sbjct 30972 ATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGTT 30914
Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | ||||||| || || || || | |||||| || || || || | ||||| ||
Sbjct 30913 GTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTCAATGTCTTGAC 30854
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 30853 GAAGATCTGCAT 30842
Score = 86.0 bits (94), Expect = 7e-12
Identities = 124/170 (73%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||||||||| || | || || || |||| || |||||||| ||||||||
Sbjct 30293 CTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCGAA 30234
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || ||||| ||||| | || | || ||||||||| ||| | || | |||| ||
Sbjct 30233 GATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCC-TGAATCTTGGACTTGA-CG 30176
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184
| | | | || ||| ||||| || || | |||||||| ||||| ||
Sbjct 30175 TTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTTGCCGGT 30126
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| || | |||||| || |||| || || ||||| || |||||
Sbjct 30577 CTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAA 30518
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116
|| || ||||||||||| | || | || ||||||||||
Sbjct 30517 GATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 30478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543210620358640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |