Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq49 280 1e-70 >seq49 Length=112291 Score = 280 bits (310), Expect = 1e-70 Identities = 1071/1666 (64%), Gaps = 28/1666 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || ||||||| || ||||| |||||| | || ||| Sbjct 51429 AACTACCAATACTTCGGCTTCAAGACCCTGGAGAGATCATACCTACTCAAGCTCGACGGC 51370 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| ||||||| || || | ||||| || || |||| || || || Sbjct 51369 AAGATTGCCGAGAGACCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGAC 51310 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || | | || | | | | || ||| |||| | ||| ||| Sbjct 51309 AACGTTGAGCGCGTCATCGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCACGCC 51250 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCG--GTGCCACAGATGTCTTCGTGTTTCCTGA 93952 | || || || |||||||| || ||||| |||||| | ||||||| || ||||| Sbjct 51249 TCTCCCACACTCTTCAACGCCGGTACCCCTCAGTGCCA--GCTGTCTTCTTGCTTCCTCG 51192 Query 93953 T-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | ||| | |||| |||||||| || || | ||||| |||||| ||| || | Sbjct 51191 TCGAC-ATGAAGGAAGACTCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATG 51133 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || || || ||| | |||| | | ||||||| || ||| Sbjct 51132 ATCTCCAAGATGGCCGGTGGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCC 51073 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || ||| ||||| |||||||| ||||| || |||| ||||| || |||||||| Sbjct 51072 TATATTGCCGGCACCAACGGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAAT 51013 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| |||||||| || || |||||| | | | ||| | ||||| | || Sbjct 51012 AACACGGCTCGCTACGTCGATCAAGGTGGTAATAAGCGTCCTGGTGCCTTCGCCATTTAC 50953 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || |||||||||||||| || || | ||||| || ||||| |||||||||||||| Sbjct 50952 CTTGAGCCCTGGCACGCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAG 50893 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | || | ||||| ||| || |||||| | || || || || ||||| Sbjct 50892 GAGGAGGTCCGTGCTCGCGACCTTTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAG 50833 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | |||||||| ||| | | ||||| || | ||||||||||| || ||||| ||| | Sbjct 50832 AGAGTCGAGAAGAACGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCT 50773 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 ||| | || | || || | |||||| | ||||| | ||||||||| Sbjct 50772 GACTGCTACGGCGAGGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGT 50713 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | ||| || | || |||||| ||| | || | || | ||| ||||| Sbjct 50712 CGCAAGACCATCAAGGCCCAGAAGCTTTGGTACGCAATTCTCGAGGCTCAGACTGAGACT 50653 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || | || | ||| | | |||||| | | ||| |||| ||||||| || ||||| Sbjct 50652 GGCAACCCTTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTC 50593 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||| ||||| || || ||||| ||||| | ||||| | || || ||| Sbjct 50592 GGCACCATCCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAG 50533 Query 94612 ATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACG 94671 | ||||| || ||| ||| || || ||| | |||||||| || ||||| Sbjct 50532 GTCGCTGTCTGCAACTTGGCTTCTCTCGCCCTTCCTACTTTCGT------TGACTACA-- 50481 Query 94672 TCTACTGCTTCGTTCGATCTGGAGGAGCTT-GTGAACT-TCGCGGGAAGGATGGTCTTGA 94729 | | | || | ||| | || ||||| ||| | | | || | | || | Sbjct 50480 ACGAGGGTGTC-TACGACTTCCAGAAGCTTCATGAGGTCACTCAGGTCG--TCGTTCGCA 50424 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 || |||||| | | || || ||| ||||||||| || ||||| || ||| Sbjct 50423 ACTTGAACAAGATCATTGATGTCAACCACTACCCCGTTCCTGAGGCCCGCAATAGCAACA 50364 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || || |||||||| | || ||||||||| | || || || | | | | Sbjct 50363 TGCGTCACCGTCCCATCGGTCTTGGTGTCCAGGGTCTTGCCGATGCTTTCCTCGCCCTTC 50304 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 | |||| | ||| ||| || || | | || ||| || || || | ||||| Sbjct 50303 GCATGCCATTCGAATCTCCTGAGGCCCGTGACCTCAACAAGAAGATCTTTGAGACCATTT 50244 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAAT 94969 | | | || ||| || || || ||||||| ||| | || | || Sbjct 50243 ACCATGCTGCTCTGACTATGTCGGTTCAGTTGGCCA---AGGAGGAAGGTACCTACTCCA 50187 Query 94970 CGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC 95029 ||| | || || || | |||||||| | |||| |||| | ||| ||| |||| Sbjct 50186 CGTACGAGGGCTCTCCTATTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGC 50127 Query 95030 CCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAA 95087 |||| | || | || ||||| |||| | | || || | | | || ||||| Sbjct 50126 CCTCTGACCTTTGGGATTGGGACTCTCTGAAGGAGCAGA--TCAAGGAGCATGGTGTCCG 50069 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| ||||| || || |||||||| || |||||||| ||||||| | |||||||| Sbjct 50068 CAACAGTCTGCTCGTTGCTCCCATGCCTACTGCCTCCACTTCGCAGATTTTGGGCAACAA 50009 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 ||||| |||||||||| || |||||| | ||| | | || || || || || || || Sbjct 50008 CGAGTGCTTCGAACCCTATACGTCCAACATTTACCAGCGTCGTGTTCTTGCTGGAGAGTT 49949 Query 95208 CCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACA 95266 || ||| ||||| || | || || | || | |||| ||||| ||| Sbjct 49948 CCAAGTCGTCAACCCCTGGCTGTTGAAAGATCTCGTCGAC-ATGGGCTTGTGGTCTGATG 49890 Query 95267 AGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGG 95326 | ||||||| | | || ||||| ||||||||||||||||| | || || | Sbjct 49889 CCATGAAGAACCGTATCATCGCCGAGAACGGTTCCGTCCAGAACATCCCCAACATTCCTG 49830 Query 95327 AGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 || | ||||| || ||||||||||| ||||| ||| | ||||| Sbjct 49829 CCGAGGTAAAGGCTCTGTACAAGACCGTCTGGGAAATCTCCCAGCG 49784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721214923160