Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq49 170 2e-37 seq179 114 1e-20 seq57 91.5 1e-13 seq6 89.7 5e-13 >seq49 Length=112291 Score = 170 bits (188), Expect = 2e-37 Identities = 734/1148 (64%), Gaps = 27/1148 (2%) Strand=Plus/Plus Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443 ||| | |||||||| || | || || ||||| |||||||||| ||| | |||||| Sbjct 50291 TCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATG 50350 Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGAT 153502 || || || | |||||| | || ||| | | ||| ||||| ||| ||| || Sbjct 50351 GGACGGTGACGCATGTTGCTATTGCGGGC-CTCAGGAACGGGGTAGTGGTTGACATCAAT 50409 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 || ||||| | |||||| || || || | ||| | | | | ||| |||| ||| || || Sbjct 50410 GATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTA 50469 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||| | | ||| | | | ||| | ||| |||| || ||||| || Sbjct 50470 GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAGC 50529 Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGAC 153682 ||| || | | ||| ||||| | |||||| | |||||||||| || ||| Sbjct 50530 GACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGT 50589 Query 153683 GCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 153742 ||| | || | ||| ||||| ||||| || || || ||| | |||||| | || Sbjct 50590 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTT 50649 Query 153743 GCCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCG 153799 ||| ||||| || | |||| || ||| | || | ||| || | Sbjct 50650 GCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGC---TTCTGGGCCTTGATGGT 50706 Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859 || ||| |||||| | |||||| |||||||| ||| ||||| |||||||| Sbjct 50707 CTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTA 50766 Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTT 153919 |||||| || || ||||| |||| || |||||||| || | ||| | ||| | Sbjct 50767 GCAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTC 50826 Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979 ||| | |||||| ||||| || | |||||| || | |||||||| || | Sbjct 50827 GACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGAC 50886 Query 153980 ATCCTCCGCGCC---CATGTTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCC 154035 |||||| ||| | ||||| ||||| | | || | | ||| |||||||||| Sbjct 50887 CTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCATGAACTC-AAAGACATCGGCGTGCC 50942 Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGC 154092 |||| |||| ||| | ||| | |||||| |||| || || || |||||||||| || Sbjct 50943 AGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGC 51002 Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCG 154152 | || | || |||||||| || | |||||| | ||| | | |||||||||||| Sbjct 51003 GAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGC 51062 Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212 || | | ||| ||| || | | || |||| | |||||||| ||| | Sbjct 51063 CGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCCACCGGCCA 51122 Query 154213 ACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGC 154272 ||| || || |||||| ||||| |||||| || || ||| || || Sbjct 51123 TCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCT 51182 Query 154273 GGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG-AAAAGAGG 154331 | | ||| | ||| || ||| ||| || | | || | | | ||| || ||||| Sbjct 51183 TCATGTCGACGAGGAAGCAAGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGT 51241 Query 154332 GTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCG--- 154388 |||||| ||||| || || | || | ||||| | ||| || |||||| || Sbjct 51242 GTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGC 51301 Query 154389 TCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGT 154448 || || | ||| | | | ||||||| || || ||||||| |||||||||||| | Sbjct 51302 TCAACGTTGTCACCCCAG---ATGCCGACTGCAACACGCATGATCATGTGCTGCGGTCTC 51358 Query 154449 TCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAA 154508 ||||| | | ||| | ||| | || ||| | || ||||| ||| | ||||| Sbjct 51359 TCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAG 51418 Query 154509 TACTTGTA 154516 || | ||| Sbjct 51419 TATTGGTA 51426 >seq179 Length=397792 Score = 114 bits (126), Expect = 1e-20 Identities = 339/513 (66%), Gaps = 25/513 (5%) Strand=Plus/Plus Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAG-CGACACCGCCACGCTGGCC 52394 ||||||| ||||| | ||||| |||| |||||| || | ||| | | | | | ||| Sbjct 380760 TTCGCAAGAAGGCCGACTGGGCCTTGAAATGGATC-AGCGACGAGAGCTCATCCTTCGCC 380818 Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454 |||| |||| ||||||||| || ||||| | || || ||| || ||| || Sbjct 380819 CAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCC 380878 Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514 || || | | || | | || | ||||| || ||||| ||| ||||||| | || Sbjct 380879 ATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATC 380938 Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACT---ACAAGACGCGC 52568 || |||||||| || |||||||| |||||||| ||||| | ||| || | || | Sbjct 380939 TCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCACCTCAAGCAC 380998 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626 | || || || | || || |||| ||| | || ||||| | Sbjct 380999 C-GCCCCAACAAGCAGGTT--------AT--TGAGGACATCATTGTCGATGCGGTCAAGA 381047 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 | || ||||||| || || | || ||||| || || || ||||||||| | | | Sbjct 381048 TTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACT 381107 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA 52745 ||| ||||||| ||||| || || || ||||| ||||| |||| |||| | | Sbjct 381108 TGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTC--GCTCTTGGCAACGA 381165 Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804 ||| || ||| || ||| || || || || ||| | |||||||| || | || || Sbjct 381166 CAAGGTCTACAAGTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGAAA 381225 Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||| ||||||||||| || | ||| || Sbjct 381226 GACCAACTTCTTCGAGAAGCGTGTTGCCGACTA 381258 >seq57 Length=484889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || ||||||||||| Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| || ||||| ||||| || || Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| || || | ||||| | | |||||||| ||||||||| Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGACGACTCCAC 315747 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || ||||| || || || || ||||||||| Sbjct 315746 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 315698 >seq6 Length=179136 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| || || | | |||||||| ||||||||||||||| | Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| ||||| || |||| |||| |||||||| ||||| || || Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 30492 ATGCCCTCCTTGTC 30479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260408747120