Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq49 170 2e-37
seq179 114 1e-20
seq57 91.5 1e-13
seq6 89.7 5e-13
>seq49
Length=112291
Score = 170 bits (188), Expect = 2e-37
Identities = 734/1148 (64%), Gaps = 27/1148 (2%)
Strand=Plus/Plus
Query 153384 TCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATG 153443
||| | |||||||| || | || || ||||| |||||||||| ||| | ||||||
Sbjct 50291 TCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACCGATG 50350
Query 153444 GGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTC-GCTATGGGATAGTGATTGCGATCGAT 153502
|| || || | |||||| | || ||| | | ||| ||||| ||| ||| ||
Sbjct 50351 GGACGGTGACGCATGTTGCTATTGCGGGC-CTCAGGAACGGGGTAGTGGTTGACATCAAT 50409
Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562
|| ||||| | |||||| || || || | ||| | | | | ||| |||| ||| || ||
Sbjct 50410 GATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAGTCGTA 50469
Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622
| |||| | | ||| | | | ||| | ||| |||| || ||||| ||
Sbjct 50470 GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAAGTTGCAGACAGC 50529
Query 153623 CGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGAC 153682
||| || | | ||| ||||| | |||||| | |||||||||| || |||
Sbjct 50530 GACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGAGCTGCGGATGGT 50589
Query 153683 GCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 153742
||| | || | ||| ||||| ||||| || || || ||| | |||||| | ||
Sbjct 50590 GCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAGCATGAAAGGGTT 50649
Query 153743 GCCGGTCTCGACTTGCGTTTCGACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCCG 153799
||| ||||| || | |||| || ||| | || | ||| || |
Sbjct 50650 GCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGC---TTCTGGGCCTTGATGGT 50706
Query 153800 CTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTA 153859
|| ||| |||||| | |||||| |||||||| ||| ||||| ||||||||
Sbjct 50707 CTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGAACTCCTCGCCGTA 50766
Query 153860 GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTT 153919
|||||| || || ||||| |||| || |||||||| || | ||| | ||| |
Sbjct 50767 GCAGTCAGCCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAGTCAGCGTTCTTCTC 50826
Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979
||| | |||||| ||||| || | |||||| || | |||||||| || |
Sbjct 50827 GACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAGGTCGCGAGCACGGAC 50886
Query 153980 ATCCTCCGCGCC---CATGTTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCGTGCC 154035
|||||| ||| | ||||| ||||| | | || | | ||| ||||||||||
Sbjct 50887 CTCCTCCTTGCCGTGGTTCTTGCG---CAGATCCATGAACTC-AAAGACATCGGCGTGCC 50942
Query 154036 AGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGC 154092
|||| |||| ||| | ||| | |||||| |||| || || || |||||||||| ||
Sbjct 50943 AGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTGATCGACGTAGC 51002
Query 154093 GCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCG 154152
| || | || |||||||| || | |||||| | ||| | | ||||||||||||
Sbjct 51003 GAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGC 51062
Query 154153 AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGT 154212
|| | | ||| ||| || | | || |||| | |||||||| ||| |
Sbjct 51063 CGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGACCAATGCCACCGGCCA 51122
Query 154213 ACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGC 154272
||| || || |||||| ||||| |||||| || || ||| || ||
Sbjct 51123 TCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGATACCCTCAATGGAGTCTTCCT 51182
Query 154273 GGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG-AAAAGAGG 154331
| | ||| | ||| || ||| ||| || | | || | | | ||| || |||||
Sbjct 51183 TCATGTCGACGAGGAAGCAAGAAGACAGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGT 51241
Query 154332 GTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCG--- 154388
|||||| ||||| || || | || | ||||| | ||| || |||||| ||
Sbjct 51242 GTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGC 51301
Query 154389 TCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGT 154448
|| || | ||| | | | ||||||| || || ||||||| |||||||||||| |
Sbjct 51302 TCAACGTTGTCACCCCAG---ATGCCGACTGCAACACGCATGATCATGTGCTGCGGTCTC 51358
Query 154449 TCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAAA 154508
||||| | | ||| | ||| | || ||| | || ||||| ||| | |||||
Sbjct 51359 TCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCTCCAGGGTCTTGAAGCCGAAG 51418
Query 154509 TACTTGTA 154516
|| | |||
Sbjct 51419 TATTGGTA 51426
>seq179
Length=397792
Score = 114 bits (126), Expect = 1e-20
Identities = 339/513 (66%), Gaps = 25/513 (5%)
Strand=Plus/Plus
Query 52336 TTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAG-CGACACCGCCACGCTGGCC 52394
||||||| ||||| | ||||| |||| |||||| || | ||| | | | | | |||
Sbjct 380760 TTCGCAAGAAGGCCGACTGGGCCTTGAAATGGATC-AGCGACGAGAGCTCATCCTTCGCC 380818
Query 52395 GAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCC 52454
|||| |||| ||||||||| || ||||| | || || ||| || ||| ||
Sbjct 380819 CAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCC 380878
Query 52455 ATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATA 52514
|| || | | || | | || | ||||| || ||||| ||| ||||||| | ||
Sbjct 380879 ATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATC 380938
Query 52515 TCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACT---ACAAGACGCGC 52568
|| |||||||| || |||||||| |||||||| ||||| | ||| || | || |
Sbjct 380939 TCTCGCGACGAGGGCCTGCACACTGACTTTGCCTGCCTATTGTACTCTCACCTCAAGCAC 380998
Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAG--CATGTTCAAGGAGGCGGTGGCTA 52626
| || || || | || || |||| ||| | || ||||| |
Sbjct 380999 C-GCCCCAACAAGCAGGTT--------AT--TGAGGACATCATTGTCGATGCGGTCAAGA 381047
Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686
| || ||||||| || || | || ||||| || || || ||||||||| | | |
Sbjct 381048 TTGAGCAGGAGTTCTTGACTGAGGCTCTGCCTTGCGCTCTCCTCGGCATGAACTCCAACT 381107
Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA 52745
||| ||||||| ||||| || || || ||||| ||||| |||| |||| | |
Sbjct 381108 TGATGAAGCAGTACATTGAGTTCGTTGCTGACCGTCTCTTGGTC--GCTCTTGGCAACGA 381165
Query 52746 -AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAA 52804
||| || ||| || ||| || || || || ||| | |||||||| || | || ||
Sbjct 381166 CAAGGTCTACAAGTCTTCCAACCCCTTCGATTTCATGGAGAACATTTCCCTCGGCGGAAA 381225
Query 52805 GACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||| ||||||||||| || | ||| ||
Sbjct 381226 GACCAACTTCTTCGAGAAGCGTGTTGCCGACTA 381258
>seq57
Length=484889
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| |||| || | || | | | |||||||| || |||||||||||
Sbjct 315925 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 315866
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || || || | |||| || ||||| ||||| || ||
Sbjct 315865 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 315806
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| || || | ||||| | | |||||||| |||||||||
Sbjct 315805 ATGCCCTCCTTATCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGACGACTCCAC 315747
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || || || ||||| || || || || |||||||||
Sbjct 315746 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 315698
>seq6
Length=179136
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| || || | | |||||||| ||||||||||||||| |
Sbjct 30612 CCGCCACGGAGACGGAGAACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGAC 30553
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || |||||| ||||| || |||| |||| |||||||| ||||| || ||
Sbjct 30552 AGAGTGCGACCGTCCTCAAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGA 30493
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 30492 ATGCCCTCCTTGTC 30479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496260408747120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |