Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq49 145 9e-30
seq179 125 9e-24
seq290 107 2e-18
>seq49
Length=112291
Score = 145 bits (160), Expect = 9e-30
Identities = 912/1452 (63%), Gaps = 37/1452 (3%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
|| ||||||| ||| || || || |||||||| ||||| ||||| || || | ||||||
Sbjct 49976 TAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAG 50035
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| || |||||||| || | ||| || |||||||||| ||| | || | || | |||
Sbjct 50036 GCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCC 50095
Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080
|| || | |||||| || | | | || | || | | |||||| || ||||||
Sbjct 50096 TTCAGAGAGTCCCAATCCCAAAGGTCAGAG--GGCTTGACATTCCACATGTCGTACTGGA 50153
Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140
|||| || || || || || ||||| | || || | || || ||| ||||
Sbjct 50154 GGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCA 50213
Query 116141 ATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198
| | || | | | | || || || || || || |||||||| || || |
Sbjct 50214 ACT--GAACCGACATAGTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAG 50271
Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258
| |||||| || || || | | || | || |||| || |||||
Sbjct 50272 GTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACC 50331
Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---AC 116315
|||||||| || || || || || || | ||| || || || || ||| ||
Sbjct 50332 CTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCGGGC---CTCAGGAAC 50388
Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375
||| || || ||| || | | | || | || ||| |||| |||| ||
Sbjct 50389 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTC 50448
Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGC 116432
||||||||| | | | || | | | ||| | | | || | ||||||||||
Sbjct 50449 ATGAAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGC 50505
Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492
|| || |||| || || |||| | |||||| | |||||| || || || ||
Sbjct 50506 GAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGT 50565
Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552
|| | || || || |||||||| | |||||| || || ||| ||| ||
Sbjct 50566 GCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGC 50625
Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612
||||||||| ||||| | || | || ||||| || || | || |||||| || | |||
Sbjct 50626 ATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCA 50685
Query 116613 TA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGT 116668
| | || | | || | ||| ||| | | |||||| ||||||||| ||
Sbjct 50686 AAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGT 50741
Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727
| | |||||| ||||| || || ||| || | || || || || || |||||
Sbjct 50742 ACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACAC 50800
Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787
| ||| | ||| | | | || ||| || | ||||||||| || || |||||||||||
Sbjct 50801 ATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGG 50860
Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847
|| ||| || || ||| || | || || | || || || |||| ||||
Sbjct 50861 GCAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATG 50920
Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---A 116904
|| || | || ||| |||||||| || || ||||| | |||| | || || |
Sbjct 50921 AACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTA 50980
Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964
|||| | || | || || | ||||| || || || |||||||| || ||||
Sbjct 50981 TTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACT 51040
Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATG 117024
|| | || ||| || || || |||| || |||| | || |||| |
Sbjct 51041 CCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCG 51100
Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084
| | |||||| || || ||| ||| ||||| ||||| | |||| || |||||
Sbjct 51101 TTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAG 51160
Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144
|| || || || ||||| |||| | ||| ||||||||| |||| || |
Sbjct 51161 ATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGA 51220
Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 117202
|| ||||| ||||||||||| || || | |||||| ||| | | |||| |||||||
Sbjct 51221 GGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATCA 51278
Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262
| ||||||||| | ||| || || || || || |||| || || ||||
Sbjct 51279 AGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACACGCA 51338
Query 117263 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 117322
| | ||||| || ||| | || | | || |||||| | | ||||| |||
Sbjct 51339 TGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCT 51398
Query 117323 CCAAGGTCTTGA 117334
||| ||||||||
Sbjct 51399 CCAGGGTCTTGA 51410
>seq179
Length=397792
Score = 125 bits (138), Expect = 9e-24
Identities = 306/461 (66%), Gaps = 22/461 (5%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| | || ||||||||||||||||| ||||| || ||||| || ||||||||
Sbjct 381259 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCAT 381200
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
||||| || ||||| || || | | |||| | || | | | ||||
Sbjct 381199 GAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AAGAGA 381142
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| || | ||| |||||||||||| |||| | |||||||| |||| |||
Sbjct 381141 CGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCG 381082
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || | |||| ||| |||||| | || || || | |||| |
Sbjct 381081 CAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCC 381022
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG---- 127520
| |||| || | | | ||| | ||||| ||||| | | ||
Sbjct 381021 TCAATAA--------CCTGCT-TGTTGGGGCGGTGCTTGAGGTGAGAGTACAATAGGCAG 380971
Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
|||| || ||| || |||||||| || |||||||| || || |||||| ||||||
Sbjct 380970 GCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 380911
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | ||||||||| | || | || |||||||||
Sbjct 380910 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATA 380851
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680
||||| ||| ||||| |||| ||||||| ||| |||||
Sbjct 380850 CCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA 380810
>seq290
Length=261601
Score = 107 bits (118), Expect = 2e-18
Identities = 331/501 (66%), Gaps = 17/501 (3%)
Strand=Plus/Plus
Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764
|| |||||||| || || | || || | ||| ||||| || | ||| || | |||
Sbjct 140179 TCGAAGCGACCGGGACGCATCAGTGCCTTGTCGAGGATGTCGGCTCTGTTGGTGCCAGCG 140238
Query 12765 ATGACAACGATGCCCG-TCTCGT-TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822
| ||||| | || | ||| | | | ||| || |||||||| |||| || || || |
Sbjct 140239 AGCACAACCA--CCTGCTCTTGGGTGTTGAAACCGTCCATCTCGGTCAGGATCTGGTTCA 140296
Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTG-CTTACCG 12878
|| || || || ||||| || ||| | |||| | ||| | | | ||||
Sbjct 140297 GAGTGGCCTCGCGCTCGTCATTGCCGCCCATGCGGTTACCCTC-CTGTCTCGACCGACCG 140355
Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938
| ||| || |||||||||||||||| ||| || || | | | ||| ||| | ||||
Sbjct 140356 ATGGCATCGATTTCGTCAATGAAAATGATGCAGGGGGCACTCTTACGAGCATTTGCAAAC 140415
Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 12996
| ||||||||||| | ||||||||||||||||||||| || || | || | || |
Sbjct 140416 AAGTCTCGCACTCTTGAAGGACCGACACCCACAAACATCTCAACGAACTCGGAACCGCTG 140475
Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056
| | || ||||| || || || || ||| |||| ||| || |||||||| |
Sbjct 140476 ACGCT--GAAAAAGGGCACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTCTTAC 140533
Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTCCAAA 13114
| || ||||| || || || | |||||||| |||||| | || || || ||
Sbjct 140534 CGGTTCCTGGAGGTCCGGCCAGGATAGCACCACGAGGGATCTTTGCGCCTAACCTC--TC 140591
Query 13115 GTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTC 13174
| |||||||||| || || ||| |||| || | || ||| || ||||
Sbjct 140592 GAAGCGCTCGGGGGTCTTCAGGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTC 140651
Query 13175 GATGCCTTCAACGTCACTGAA 13195
||||| ||||||| |||||
Sbjct 140652 CATGCCGGCAACGTCGCTGAA 140672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613504738302360
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