Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq49 145 9e-30 seq179 125 9e-24 seq290 107 2e-18 >seq49 Length=112291 Score = 145 bits (160), Expect = 9e-30 Identities = 912/1452 (63%), Gaps = 37/1452 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| ||| || || || |||||||| ||||| ||||| || || | |||||| Sbjct 49976 TAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAG 50035 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| || | ||| || |||||||||| ||| | || | || | ||| Sbjct 50036 GCAGTAGGCATGGGAGCAACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCC 50095 Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 || || | |||||| || | | | || | || | | |||||| || |||||| Sbjct 50096 TTCAGAGAGTCCCAATCCCAAAGGTCAGAG--GGCTTGACATTCCACATGTCGTACTGGA 50153 Query 116081 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 116140 |||| || || || || || ||||| | || || | || || ||| |||| Sbjct 50154 GGATGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCA 50213 Query 116141 ATTCGGAGCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 | | || | | | | || || || || || || |||||||| || || | Sbjct 50214 ACT--GAACCGACATAGTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAG 50271 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 | |||||| || || || | | || | || |||| || ||||| Sbjct 50272 GTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACC 50331 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---AC 116315 |||||||| || || || || || || | ||| || || || || ||| || Sbjct 50332 CTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCGGGC---CTCAGGAAC 50388 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||| || || ||| || | | | || | || ||| |||| |||| || Sbjct 50389 GGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTC 50448 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT---ACTTAGGAAGGGC 116432 ||||||||| | | | || | | | ||| | | | || | |||||||||| Sbjct 50449 ATGAAGCTTCTGGAAGTCGTA---GACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGC 50505 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGT 116492 || || |||| || || |||| | |||||| | |||||| || || || || Sbjct 50506 GAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGT 50565 Query 116493 ACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 || | || || || |||||||| | |||||| || || ||| ||| || Sbjct 50566 GCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGC 50625 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 ||||||||| ||||| | || | || ||||| || || | || |||||| || | ||| Sbjct 50626 ATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCA 50685 Query 116613 TA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGT 116668 | | || | | || | ||| ||| | | |||||| ||||||||| || Sbjct 50686 AAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGT 50741 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 | | |||||| ||||| || || ||| || | || || || || || ||||| Sbjct 50742 ACAAGGCCTCGAACTCCTC-GCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACAC 50800 Query 116728 AAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 | ||| | ||| | | | || ||| || | ||||||||| || || ||||||||||| Sbjct 50801 ATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGG 50860 Query 116788 GCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 116847 || ||| || || ||| || | || || | || || || |||| |||| Sbjct 50861 GCAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATG 50920 Query 116848 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---A 116904 || || | || ||| |||||||| || || ||||| | |||| | || || | Sbjct 50921 AACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTA 50980 Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964 |||| | || | || || | ||||| || || || |||||||| || |||| Sbjct 50981 TTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACT 51040 Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 || | || ||| || || || |||| || |||| | || |||| | Sbjct 51041 CCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCG 51100 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | | |||||| || || ||| ||| ||||| ||||| | |||| || ||||| Sbjct 51101 TTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAG 51160 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || || || ||||| |||| | ||| ||||||||| |||| || | Sbjct 51161 ATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGA 51220 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCT 117202 || ||||| ||||||||||| || || | |||||| ||| | | |||| ||||||| Sbjct 51221 GGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATCA 51278 Query 117203 TATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCA 117262 | ||||||||| | ||| || || || || || |||| || || |||| Sbjct 51279 AGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACACGCA 51338 Query 117263 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 117322 | | ||||| || ||| | || | | || |||||| | | ||||| ||| Sbjct 51339 TGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCTTGAGTAGGTATGATCTCT 51398 Query 117323 CCAAGGTCTTGA 117334 ||| |||||||| Sbjct 51399 CCAGGGTCTTGA 51410 >seq179 Length=397792 Score = 125 bits (138), Expect = 9e-24 Identities = 306/461 (66%), Gaps = 22/461 (5%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || ||||||||||||||||| ||||| || ||||| || |||||||| Sbjct 381259 GTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTCCAT 381200 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 ||||| || ||||| || || | | |||| | || | | | |||| Sbjct 381199 GAAATCGAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGAGCGACC--AAGAGA 381142 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||||||||||| |||| | |||||||| |||| ||| Sbjct 381141 CGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAGCG 381082 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | |||| ||| |||||| | || || || | |||| | Sbjct 381081 CAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGTCC 381022 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGA----AGAGTTCCACAG---- 127520 | |||| || | | | ||| | ||||| ||||| | | || Sbjct 381021 TCAATAA--------CCTGCT-TGTTGGGGCGGTGCTTGAGGTGAGAGTACAATAGGCAG 380971 Query 127521 -CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 |||| || ||| || |||||||| || |||||||| || || |||||| |||||| Sbjct 380970 GCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACCA 380911 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||||||||| | || | || ||||||||| Sbjct 380910 GGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGATA 380851 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||||| ||| ||||| |||| ||||||| ||| ||||| Sbjct 380850 CCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA 380810 >seq290 Length=261601 Score = 107 bits (118), Expect = 2e-18 Identities = 331/501 (66%), Gaps = 17/501 (3%) Strand=Plus/Plus Query 12705 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 12764 || |||||||| || || | || || | ||| ||||| || | ||| || | ||| Sbjct 140179 TCGAAGCGACCGGGACGCATCAGTGCCTTGTCGAGGATGTCGGCTCTGTTGGTGCCAGCG 140238 Query 12765 ATGACAACGATGCCCG-TCTCGT-TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGA 12822 | ||||| | || | ||| | | | ||| || |||||||| |||| || || || | Sbjct 140239 AGCACAACCA--CCTGCTCTTGGGTGTTGAAACCGTCCATCTCGGTCAGGATCTGGTTCA 140296 Query 12823 TGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCACTGCGTTG-CTTACCG 12878 || || || || ||||| || ||| | |||| | ||| | | | |||| Sbjct 140297 GAGTGGCCTCGCGCTCGTCATTGCCGCCCATGCGGTTACCCTC-CTGTCTCGACCGACCG 140355 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 | ||| || |||||||||||||||| ||| || || | | | ||| ||| | |||| Sbjct 140356 ATGGCATCGATTTCGTCAATGAAAATGATGCAGGGGGCACTCTTACGAGCATTTGCAAAC 140415 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CGGCGG 12996 | ||||||||||| | ||||||||||||||||||||| || || | || | || | Sbjct 140416 AAGTCTCGCACTCTTGAAGGACCGACACCCACAAACATCTCAACGAACTCGGAACCGCTG 140475 Query 12997 AACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 13056 | | || ||||| || || || || ||| |||| ||| || |||||||| | Sbjct 140476 ACGCT--GAAAAAGGGCACACCAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTCTTAC 140533 Query 13057 CCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTCCAAA 13114 | || ||||| || || || | |||||||| |||||| | || || || || Sbjct 140534 CGGTTCCTGGAGGTCCGGCCAGGATAGCACCACGAGGGATCTTTGCGCCTAACCTC--TC 140591 Query 13115 GTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTC 13174 | |||||||||| || || ||| |||| || | || ||| || |||| Sbjct 140592 GAAGCGCTCGGGGGTCTTCAGGAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTC 140651 Query 13175 GATGCCTTCAACGTCACTGAA 13195 ||||| ||||||| ||||| Sbjct 140652 CATGCCGGCAACGTCGCTGAA 140672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504738302360