Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq49 125 1e-23 >seq49 Length=112291 Score = 125 bits (138), Expect = 1e-23 Identities = 448/691 (65%), Gaps = 31/691 (4%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||||||||||| | | || | | | | | ||| ||||||||| Sbjct 49586 TCTTGGTCGACGGTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATG 49645 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| || | ||||||| | | ||||| || | | Sbjct 49646 CCCGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTGGTAATTTTGCCCATGGTA 49705 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || |||||| ||||| || ||||| ||||||||||| ||| || || || || Sbjct 49706 GGATCCTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAA-GGCACCGCGGTCGGC 49764 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC-GTCTCT-- 204072 ||||| | | || ||| ||| || || ||||| || |||||| ||| | || | Sbjct 49765 AGCCATCTGCACAACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTAC 49824 Query 204073 -------GGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCA 204125 || ||||| || || ||| || || ||||| ||||| || | Sbjct 49825 CTCGGCAGGAATGTTGGGG---ATGTTCTG-------GACGGAACCGTTCTCGGCGATGA 49874 Query 204126 GTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGG 204185 | || || | | || ||||| ||||| || || || || ||| || Sbjct 49875 TACGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGG 49934 Query 204186 GGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATG 204245 |||||| || || || ||||| | || || | || | | | |||| || | | Sbjct 49935 GGTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGG 49994 Query 204246 GTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305 ||||||| |||||||||||| |||||||| | ||| ||| || ||||||||||| | Sbjct 49995 GTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 50054 Query 204306 GGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCG 204364 |||||| |||||| ||||| | | | || |||| |||||||||| ||| || Sbjct 50055 CGAGCAGACTGTTGCGGACACCATGCTCCTTGA-TCTGCTCCTTCAGAGAGTCCCAATCC 50113 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | || ||| || || |||||||||| |||| | |||||| ||| | || Sbjct 50114 CAAAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGA 50173 Query 204425 CTGCCCTTGTACGTCGGATAAGG---CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCC 204481 ||||| |||||| ||| ||| || ||||| | |||| || ||| | | Sbjct 50174 GAGCCCTCGTACGT-GGAGTAGGTACCT--TCCTCCTTGGCCAACTGAACCGACATAGTC 50230 Query 204482 ATGGCGTGATAGTACATGGTCTCAAAGATCT 204512 | || || ||| |||||||||||||||| Sbjct 50231 AGAGCAGCATGGTAAATGGTCTCAAAGATCT 50261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795152009439760