Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq49 125 1e-23
>seq49
Length=112291
Score = 125 bits (138), Expect = 1e-23
Identities = 448/691 (65%), Gaps = 31/691 (4%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896
||||| || || ||||||||||||| | | || | | | | | ||| |||||||||
Sbjct 49586 TCTTGGTCGACGGTGAACTGAATGGGGGCCGAAGCTGCCTGGGTACGCAGGTAGTACATG 49645
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || || ||| || | ||||||| | | ||||| || | |
Sbjct 49646 CCCGTCTTGAGACCAAGCTTCCAGCCAGCAAAGTGCATGCTGGTAATTTTGCCCATGGTA 49705
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015
|| || |||||| ||||| || ||||| ||||||||||| ||| || || || ||
Sbjct 49706 GGATCCTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAA-GGCACCGCGGTCGGC 49764
Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC-GTCTCT-- 204072
||||| | | || ||| ||| || || ||||| || |||||| ||| | || |
Sbjct 49765 AGCCATCTGCACAACGGTACGCTGGGAGATTTCCCAGACGGTCTTGTACAGAGCCTTTAC 49824
Query 204073 -------GGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCA 204125
|| ||||| || || ||| || || ||||| ||||| || |
Sbjct 49825 CTCGGCAGGAATGTTGGGG---ATGTTCTG-------GACGGAACCGTTCTCGGCGATGA 49874
Query 204126 GTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGG 204185
| || || | | || ||||| ||||| || || || || ||| ||
Sbjct 49875 TACGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACGAGATCTTTCAACAGCCAGG 49934
Query 204186 GGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATG 204245
|||||| || || || ||||| | || || | || | | | |||| || | |
Sbjct 49935 GGTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGG 49994
Query 204246 GTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305
||||||| |||||||||||| |||||||| | ||| ||| || ||||||||||| |
Sbjct 49995 GTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAA 50054
Query 204306 GGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCG 204364
|||||| |||||| ||||| | | | || |||| |||||||||| ||| ||
Sbjct 50055 CGAGCAGACTGTTGCGGACACCATGCTCCTTGA-TCTGCTCCTTCAGAGAGTCCCAATCC 50113
Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424
| || ||| || || |||||||||| |||| | |||||| ||| | ||
Sbjct 50114 CAAAGGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAATAGGA 50173
Query 204425 CTGCCCTTGTACGTCGGATAAGG---CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCC 204481
||||| |||||| ||| ||| || ||||| | |||| || ||| | |
Sbjct 50174 GAGCCCTCGTACGT-GGAGTAGGTACCT--TCCTCCTTGGCCAACTGAACCGACATAGTC 50230
Query 204482 ATGGCGTGATAGTACATGGTCTCAAAGATCT 204512
| || || ||| ||||||||||||||||
Sbjct 50231 AGAGCAGCATGGTAAATGGTCTCAAAGATCT 50261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795152009439760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |