Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq179 145 8e-30 seq57 118 1e-21 seq259 105 7e-18 seq6 104 2e-17 >seq179 Length=397792 Score = 145 bits (160), Expect = 8e-30 Identities = 198/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| || | || ||||| | ||||||||| ||| || || Sbjct 380651 GTAGGTGTCGATGAGTAGCGAGTAGGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAA 380592 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | ||| || || ||| ||||| || || || Sbjct 380591 ACCGTAGAAGCAACGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCAACGAGGTT 380532 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||||||||||||| |||||||| ||||| || | ||| |||||| | Sbjct 380531 CTCATTGACGATGCCGTCGGATGCGGCGAAGAAGGCGAGGATGTGGGAGATGAAGTACTT 380472 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| | ||||||||||| || | |||||| Sbjct 380471 CTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATCTCCTC 380412 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||||| || || |||||||| || |||||||| Sbjct 380411 GGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 380376 >seq57 Length=484889 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || |||||| | || || ||| | || Sbjct 315699 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 315758 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| || || ||||| || ||| ||||||| Sbjct 315759 GACACCATCGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 315818 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| ||||||||| Sbjct 315819 CAGCGCCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCAGACTACAAC 315878 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||| ||||| Sbjct 315879 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 315913 >seq259 Length=323629 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 46239 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 46298 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||||||||| | Sbjct 46299 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCTTG 46358 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||| ||||||||||| ||| Sbjct 46359 ATCTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGATTACAACATCCAGAAG 46418 Query 38433 G 38433 | Sbjct 46419 G 46419 >seq6 Length=179136 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| | || || ||| | | || | | | Sbjct 30396 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCTTCTGATACCATCG 30455 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || || | ||||| ||||| |||||| | ||||| ||||| || | Sbjct 30456 ACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTCTTA 30515 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| ||||| || || || |||| ||||| || |||||||||||| || |||| Sbjct 30516 TCTTCGCCGGCAAGCAACTTGAGGACGGTCGCACTCTGTCCGACTACAACATTCAGAAGG 30575 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | | ||||| || ||||| || ||| | | ||||| Sbjct 30576 AGTCTACGCTCCACTTGGTTCTCCGTCTCCGTGGCGG 30612 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| | || ||||| || |||| | | | |||| | || Sbjct 30124 TCACCGGCAAGACCATCACTCTTGAGGTCGAATCCTCCGATACTATTGACAACG-TCAAG 30182 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || || | ||||| || || || ||| | ||||||||||| || || | ||| ||| Sbjct 30183 TCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAACAGCGTCTTATCTTCGCTGGC 30242 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| || ||||| ||||||||| || || ||||| | || || Sbjct 30243 AAGCAGCTTGAGGACGGCCGAACCCTTTCCGACTACAATATTCAGAAGGAGTCTACCCTT 30302 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 30303 CACTTGGTTCTCCG 30316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170793056640