Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq254 248 1e-60
seq22 147 3e-30
seq84 140 4e-28
seq101 102 1e-16
seq49 89.7 7e-13
>seq254
Length=346967
Score = 248 bits (274), Expect = 1e-60
Identities = 481/710 (68%), Gaps = 0/710 (0%)
Strand=Plus/Minus
Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081
|||||||| ||||| | || ||||| || || |||||||||||||| || | || ||
Sbjct 155777 ATGGCGGCCTGGACAGCGGCACCGTACGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 155718
Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141
| || || ||||| || || || || | | | || | ||||| || || ||
Sbjct 155717 GGCTCCTTTCCGTTGAAGTAGTCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 155658
Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201
|| ||||||| ||||| || | || | || || |||| ||| | ||| |||
Sbjct 155657 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTAAGGACA 155598
Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261
||||| || | || ||||||| |||| || || ||||| || || |||
Sbjct 155597 CGATCGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 155538
Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321
||||| ||||| || |||||||| | || ||| | | || || || || |||| |||
Sbjct 155537 CGGGTGATGGAGGTGTAGAAATCGATACCCTCGAAGAGAGAGTCGATCTCGATGGAGGTT 155478
Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381
|| || | ||| || | || ||||| || |||||||| || || || | ||| || |||
Sbjct 155477 TGGGCAGACGAGGACAGGGTGCGCTTGGCACGCTCACAGGCGGTGCGAAGACGGCGCAGG 155418
Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441
|| || | ||| ||||| ||| |||||||| || || || ||||| | ||||||
Sbjct 155417 GCGCGGGCGTTGGAGGAAAGATCCTTCTTATGCTTGCGCTTGAACTCGTTGACGAAGTGG 155358
Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501
| ||| | ||||| || |||||||||||||| || || || ||||| | |||
Sbjct 155357 TTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCGGTGGACTTG 155298
Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561
|| || || || || | |||||| | | | || ||||| || ||||| ||||| ||
Sbjct 155297 ACCTCGAAAATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTACCGCCACCGAGA 155238
Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621
|| || ||||| ||||| ||| | || ||||| || | ||||| || || ||
Sbjct 155237 TCGAAGATGAGAACGTTGCGCTCGCCCTCAGCCTTCTTGTCCAAGCCGTAGGCAATGGCG 155178
Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681
|| || || || || || || || || || ||| ||||| ||||| | || ||
Sbjct 155177 GCAGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCGGCAATGAGACCGGCGTCC 155118
Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
|| || || || || || || ||||| |||||||| ||||| || || ||
Sbjct 155117 TTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTAACAAC 155068
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957
||||||||| | ||||||| |||| ||||| | || || |||||||| |||||
Sbjct 154842 TTCATATCGGCCTGGACCTCGGAGTCCTGGAACTTGCGGCCAATGAGACGCTTGGCATCG 154783
Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017
|| || ||||| | |||||||||||| |||||||| ||||| || || || |||||
Sbjct 154782 AAGACCGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCCGCATCTCCAATCAGACGC 154723
Query 8018 TC 8019
||
Sbjct 154722 TC 154721
>seq22
Length=145821
Score = 147 bits (162), Expect = 3e-30
Identities = 345/518 (67%), Gaps = 7/518 (1%)
Strand=Plus/Minus
Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302
||| ||||| ||||| |||||||| || || | | || |||| ||| | | ||
Sbjct 1647 CAGGTCCTCGAAACGGGCACGGGTGATCTGAGTGGTGTAGTCCTCGCCATCGAAGAGAGA 1588
Query 7303 ATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360
|| || |||||||| || || || || | ||| || ||||| || ||||| ||
Sbjct 1587 GTCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAA 1530
Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420
|| || || | ||| || |||||||| |||| || || | || ||||| || ||
Sbjct 1529 GCAGTACGGAGACGGCGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGC 1470
Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
| || || | | |||| || || | | ||||| || | ||||||||||||
Sbjct 1469 TGGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGG 1410
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
|| || || ||||| || ||||| |||| ||| || | ||||| | | ||||||
Sbjct 1409 GTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTAAGGAGGGAAACA 1350
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTC 7597
|| || ||||||||||||| ||| | ||||| ||||| || | | | |||
Sbjct 1349 TCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCG 1290
Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657
| | |||||||| || || || || || || || || || || ||||||||| |||
Sbjct 1289 GCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGAAGAACGTTA 1230
Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717
|| || || || | | || || || || || || || || ||||| ||||||||
Sbjct 1229 AGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 1170
Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
||||| || | ||| || | | ||| ||||| || ||
Sbjct 1169 GGGACGGTAATGACGGCCTTCTCGACCTTCTTGCCAAG 1132
>seq84
Length=84303
Score = 140 bits (154), Expect = 4e-28
Identities = 243/353 (69%), Gaps = 3/353 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||||||| || || || ||||| || || || |||| |||
Sbjct 46796 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGCCAGAACCTCGAAGACACCC 46855
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
|||||| | | |||||||| || ||||||||||| ||||| | | || |
Sbjct 46856 TGGTCAATGGACAGGAGGGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATGATC 46915
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
| || |||| | |||| || ||||| || ||||| || || || || || |||
Sbjct 46916 TGGCGCTCACCGTC---GGTCTTGTCAAGACCATAGGCGATGGCGGCGGCGGTGGGCTCA 46972
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|||| ||| || ||| ||| || || ||||| | ||||| || || || || ||
Sbjct 46973 TTAACAATGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTGGCGC 47032
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| ||||| |||||||| ||||| || ||||| |||| || || ||||| || ||
Sbjct 47033 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTAACCTTCTTGCCAAGG 47092
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| | || |||| || ||||| ||| | || ||| | |||| ||| ||
Sbjct 47093 TAGGCCTCGGCGACCTCCTTCATCTTGCCCAAAATCATGGCGGAAACCTCCTC 47145
>seq101
Length=450935
Score = 102 bits (112), Expect = 1e-16
Identities = 226/337 (67%), Gaps = 8/337 (2%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||| || || |||||||||||||| || || || ||| | ||||| ||||||| |||
Sbjct 244880 ATCAAAGTCCTCACCACCCAAGTGGGTGTCACCGTTGGTAGACTTGACCTCAAAGACACC 244821
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| || | | | || | ||| || |||||||| || || || | | | ||
Sbjct 244820 GTTCTGGATCTCGAGGACGGAGATATCGAAAGTACCACCGCCAAGATCGTAGACGGCAAC 244761
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
| || ||| | | ||| || |||||||| || | || || || || || ||
Sbjct 244760 ------AACGCGGTCCTCCTCCTTCTCAAGACCGTAAGCCAGGGCGGCGGCAGTGGGCTC 244707
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTC 7694
|| | || ||| || ||| ||||||||||| | |||| | || || || || || |
Sbjct 244706 GTTGACAACACGGAGGACGTTGAGGCCAGCAATC-TGGCCGGCGTCCTTGGTGGCCTGAC 244648
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || || ||||| |||||||||||||| || ||||| |||| | |||| ||| ||
Sbjct 244647 GCTGAGAGTCGTTGAAGTAGGCCGGGACAGTGACGACAGCGTTCTTGACGGGCTTGGAGA 244588
Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791
| || | || ||| | || ||||| ||| | || ||
Sbjct 244587 GGTAGGCCTCGGCGGTCTCCTTCATCTTGTTCAGGAC 244551
>seq49
Length=112291
Score = 89.7 bits (98), Expect = 7e-13
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 104707 TAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGAT 104766
|| || |||| |||||| |||||||| ||||||||||| || |||||||| || |||||
Sbjct 49976 TAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAG 50035
Query 104767 GCGGTAGGCATAGGTGCAAGAAGAAGACTATT 104798
|| |||||||| || |||| || ||||| ||
Sbjct 50036 GCAGTAGGCATGGGAGCAACGAGCAGACTGTT 50067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635130251529640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |