Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq254 248 1e-60 seq22 147 3e-30 seq84 140 4e-28 seq101 102 1e-16 seq49 89.7 7e-13 >seq254 Length=346967 Score = 248 bits (274), Expect = 1e-60 Identities = 481/710 (68%), Gaps = 0/710 (0%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 155777 ATGGCGGCCTGGACAGCGGCACCGTACGCAACAGCCTCATCGGGGTTGATGGACTTGTTG 155718 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 | || || ||||| || || || || | | | || | ||||| || || || Sbjct 155717 GGCTCCTTTCCGTTGAAGTAGTCGGAGATGAGCTTCTGGACACGGGGGATACGGGTGGAA 155658 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 || ||||||| ||||| || | || | || || |||| ||| | ||| ||| Sbjct 155657 CCTCCGACCAGGACGATCTCGTGGACCTGGGACTTGTCGACCTTGGCGTCGGTAAGGACA 155598 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 ||||| || | || ||||||| |||| || || ||||| || || ||| Sbjct 155597 CGATCGACGGGCTGGATGGTGGAGCGGAACAGGTCCTGGCAGAGCTCCTCGAAGCGAGCA 155538 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || |||||||| | || ||| | | || || || || |||| ||| Sbjct 155537 CGGGTGATGGAGGTGTAGAAATCGATACCCTCGAAGAGAGAGTCGATCTCGATGGAGGTT 155478 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | ||| || | || ||||| || |||||||| || || || | ||| || ||| Sbjct 155477 TGGGCAGACGAGGACAGGGTGCGCTTGGCACGCTCACAGGCGGTGCGAAGACGGCGCAGG 155418 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 || || | ||| ||||| ||| |||||||| || || || ||||| | |||||| Sbjct 155417 GCGCGGGCGTTGGAGGAAAGATCCTTCTTATGCTTGCGCTTGAACTCGTTGACGAAGTGG 155358 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | ||| | ||||| || |||||||||||||| || || || ||||| | ||| Sbjct 155357 TTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCGGTGGACTTG 155298 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || || || || | |||||| | | | || ||||| || ||||| ||||| || Sbjct 155297 ACCTCGAAAATGCCCTCCTCAATGGTCAGGAGGGACACATCGAAGGTACCGCCACCGAGA 155238 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| ||||| ||| | || ||||| || | ||||| || || || Sbjct 155237 TCGAAGATGAGAACGTTGCGCTCGCCCTCAGCCTTCTTGTCCAAGCCGTAGGCAATGGCG 155178 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || || || || ||| ||||| ||||| | || || Sbjct 155177 GCAGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCGGCAATGAGACCGGCGTCC 155118 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 || || || || || || || ||||| |||||||| ||||| || || || Sbjct 155117 TTGGTAGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACAGTAACAAC 155068 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 ||||||||| | ||||||| |||| ||||| | || || |||||||| ||||| Sbjct 154842 TTCATATCGGCCTGGACCTCGGAGTCCTGGAACTTGCGGCCAATGAGACGCTTGGCATCG 154783 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | |||||||||||| |||||||| ||||| || || || ||||| Sbjct 154782 AAGACCGTGTTGTGGGGGTTCATGGCGACCTGGTTCTTGGCCGCATCTCCAATCAGACGC 154723 Query 8018 TC 8019 || Sbjct 154722 TC 154721 >seq22 Length=145821 Score = 147 bits (162), Expect = 3e-30 Identities = 345/518 (67%), Gaps = 7/518 (1%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| ||||| ||||| |||||||| || || | | || |||| ||| | | || Sbjct 1647 CAGGTCCTCGAAACGGGCACGGGTGATCTGAGTGGTGTAGTCCTCGCCATCGAAGAGAGA 1588 Query 7303 ATCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || |||||||| || || || || | ||| || ||||| || ||||| || Sbjct 1587 GTCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCGCAA 1530 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | ||| || |||||||| |||| || || | || ||||| || || Sbjct 1529 GCAGTACGGAGACGGCGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGC 1470 Query 7421 TTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | || || | | |||| || || | | ||||| || | |||||||||||| Sbjct 1469 TGGAAGTCCTTCTTGCAGTGGTCCAGAAGGTTGGTGTCGAAGTCCTGACCACCCAAGTGG 1410 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || ||||| || ||||| |||| ||| || | ||||| | | |||||| Sbjct 1409 GTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCGCCCTGGATGTTAAGGAGGGAAACA 1350 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTC 7597 || || ||||||||||||| ||| | ||||| ||||| || | | | ||| Sbjct 1349 TCGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCAGACTTGCCG 1290 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 | | |||||||| || || || || || || || || || || ||||||||| ||| Sbjct 1289 GCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGAAGAACGTTA 1230 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || || || || | | || || || || || || || || ||||| |||||||| Sbjct 1229 AGACCGGCGATGGCACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 1170 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||||| || | ||| || | | ||| ||||| || || Sbjct 1169 GGGACGGTAATGACGGCCTTCTCGACCTTCTTGCCAAG 1132 >seq84 Length=84303 Score = 140 bits (154), Expect = 4e-28 Identities = 243/353 (69%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| || || || |||| ||| Sbjct 46796 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGCCAGAACCTCGAAGACACCC 46855 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||| | | |||||||| || ||||||||||| ||||| | | || | Sbjct 46856 TGGTCAATGGACAGGAGGGAAACATCGAAAGTACCACCACCAAGGTCGTAGACGATGATC 46915 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || |||| | |||| || ||||| || ||||| || || || || || ||| Sbjct 46916 TGGCGCTCACCGTC---GGTCTTGTCAAGACCATAGGCGATGGCGGCGGCGGTGGGCTCA 46972 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 |||| ||| || ||| ||| || || ||||| | ||||| || || || || || Sbjct 46973 TTAACAATGCGGAGAACGTTAAGTCCGGCAATGACACCGGCATCCTTGGTGGCCTGGCGC 47032 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| || || ||||| || || Sbjct 47033 TGGTTGTCGTTGAAGTAGGCGGGGACAGTGACGACGGCGTGGGTAACCTTCTTGCCAAGG 47092 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || |||| || ||||| ||| | || ||| | |||| ||| || Sbjct 47093 TAGGCCTCGGCGACCTCCTTCATCTTGCCCAAAATCATGGCGGAAACCTCCTC 47145 >seq101 Length=450935 Score = 102 bits (112), Expect = 1e-16 Identities = 226/337 (67%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || |||||||||||||| || || || ||| | ||||| ||||||| ||| Sbjct 244880 ATCAAAGTCCTCACCACCCAAGTGGGTGTCACCGTTGGTAGACTTGACCTCAAAGACACC 244821 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || | | | || | ||| || |||||||| || || || | | | || Sbjct 244820 GTTCTGGATCTCGAGGACGGAGATATCGAAAGTACCACCGCCAAGATCGTAGACGGCAAC 244761 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || ||| | | ||| || |||||||| || | || || || || || || Sbjct 244760 ------AACGCGGTCCTCCTCCTTCTCAAGACCGTAAGCCAGGGCGGCGGCAGTGGGCTC 244707 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG-CATCTTTCGTCGCTTGTC 7694 || | || ||| || ||| ||||||||||| | |||| | || || || || || | Sbjct 244706 GTTGACAACACGGAGGACGTTGAGGCCAGCAATC-TGGCCGGCGTCCTTGGTGGCCTGAC 244648 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||||||||| || ||||| |||| | |||| ||| || Sbjct 244647 GCTGAGAGTCGTTGAAGTAGGCCGGGACAGTGACGACAGCGTTCTTGACGGGCTTGGAGA 244588 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 | || | || ||| | || ||||| ||| | || || Sbjct 244587 GGTAGGCCTCGGCGGTCTCCTTCATCTTGTTCAGGAC 244551 >seq49 Length=112291 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 104707 TAGATATTGGTCGTATACGGTTCGAAACACTCGTTGTTCCCTAAAATCTGGGATGTGGAT 104766 || || |||| |||||| |||||||| ||||||||||| || |||||||| || ||||| Sbjct 49976 TAAATGTTGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAG 50035 Query 104767 GCGGTAGGCATAGGTGCAAGAAGAAGACTATT 104798 || |||||||| || |||| || ||||| || Sbjct 50036 GCAGTAGGCATGGGAGCAACGAGCAGACTGTT 50067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130251529640