Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq49 187 3e-42 seq179 129 7e-25 >seq49 Length=112291 Score = 187 bits (206), Expect = 3e-42 Identities = 889/1399 (64%), Gaps = 43/1399 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || |||| ||| || || | |||| || Sbjct 51354 CCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCGCGTC 51295 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||||| | | |||| |||||| | || || |||||| Sbjct 51294 ATCGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCACGCCTCTCCCACACTCTTC 51235 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||| |||| ||| ||||| | | | ||||| || Sbjct 51234 AACGCCGGTACCCCTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAGAC 51175 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || |||| ||| |||| || ||| ||||| ||| ||| ||| Sbjct 51174 TCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCCGGT 51115 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | || ||| || | |||| || |||| || || || Sbjct 51114 GGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAAC 51055 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || || | || | || || |||||||| || || || ||| || ||||| || Sbjct 51054 GGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACGTC 50995 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | |||| ||| ||||| || | |||| | || |||||||| |||||| Sbjct 50994 GATCAAGGTGGTAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGGCAC 50938 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || ||| || | |||||| | || |||| ||||| || | ||||||| || ||| Sbjct 50937 GCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGC 50879 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 ||||| || ||| || |||||||| || ||||| |||||||||||||| ||| ||| Sbjct 50878 TCGCGACCTTTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAGAA 50819 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 | | ||| | ||| | ||||| | || |||||||| | || | || || Sbjct 50818 CGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCTACGGCGA 50759 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGA--GGAAG----AAAGTCGGGCGACTGCGAC 112258 |||||| || ||| | ||| |||||||| || || | |||| ||| | Sbjct 50758 GGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGCAAGACCATCAA 50699 Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || |||| || | ||| | || |||||| || |||| || |||||||| | || Sbjct 50698 GG-CCCAGAAGC-----TTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCAACCC 50645 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||||||||| || ||| |||| ||||| || || ||||| | || || Sbjct 50644 TTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACCAT 50585 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 | || ||||||||||| || || ||| | || | | | |||||| ||||| Sbjct 50584 CCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTCGCTGT 50525 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 || ||| | || || |||| || || | | || || | || || | | | | Sbjct 50524 CTGCAACTTGGCTTCTCTCGCCCTTCCTACTTTCGTTGACTACAACGAGGGTGTC-TACG 50466 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || || || || || || | ||| ||| | |||| | |||| Sbjct 50465 ACTTCCAGAAGCTTCATGAGGTCACTCAGGTCGTCGTTCGCAACTTGAACAAGATCATTG 50406 Query 112558 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614 || || |||||||| |||| || || || || ||| | |||||||| | Sbjct 50405 ATGTCAACCACTACCCCGTTCCTGAG---GCCCGCAATAGCAACATGCGTCACCGTCCCA 50349 Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATT 112674 | ||||| |||||||| ||||| || |||| ||| | |||| |||| || | Sbjct 50348 TCGGTCTTGGTGTCCAGGGTCTTGCCGATGCTTTCCTCGCCCTTCGCATGCCATTCGAAT 50289 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT-- 112732 | || || || |||| | || |||||||| || || || || ||||| Sbjct 50288 CTCCTGAGGCCCGTGACCTCAACAAGAAGATCTTTGAGACCATTTACCATGCTGCTCTGA 50229 Query 112733 -TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | | || |||| ||||||| ||| || ||| | || || | ||||| |||| Sbjct 50228 CTATGTCG-GTTC--AGTTGGCCAAGGAGGAAGGTACCTACTCCACGTACGAGGGCTCTC 50172 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCACT 112848 | ||| || || | || || | || |||||| | | || || | ||| | Sbjct 50171 CTATTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTT---T 50115 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 || |||||| |||| ||||| | ||||||||| | ||| | || |||||||| | Sbjct 50114 GGGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCATGGTGTCCGCAACAGTCTGCTCG 50055 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 | || || ||||| || |||||||| | || || ||||| || || || ||||| |||| Sbjct 50054 TTGCTCCCATGCCTACTGCCTCCACTTCGCAGATTTTGGGCAACAACGAGTGCTTCGAAC 49995 Query 112969 CCTACACGACGAACATCTA 112987 |||| ||| | ||||| || Sbjct 49994 CCTATACGTCCAACATTTA 49976 >seq179 Length=397792 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || |||| || | || || || ||||||||||||||||||| ||| | Sbjct 380810 TCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCG 380869 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||| | | |||| |||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 380870 TTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 380929 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| |||||||| |||||||| || ||| || ||||| Sbjct 380930 GAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGC 380970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739909271120