Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq49 187 3e-42
seq179 129 7e-25
>seq49
Length=112291
Score = 187 bits (206), Expect = 3e-42
Identities = 889/1399 (64%), Gaps = 43/1399 (3%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| || || |||| ||| || || | |||| ||
Sbjct 51354 CCGCAGCACATGATCATGCGTGTTGCAGTCGGCATCTGGGGTGACAACGTTGAGCGCGTC 51295
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| ||||| ||| || ||||||| | | |||| |||||| | || || ||||||
Sbjct 51294 ATCGAGACCTACAACTTGATGTCCAGCAAGTTCTTCACCCACGCCTCTCCCACACTCTTC 51235
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| ||||| || ||| |||| ||| ||||| | | | ||||| ||
Sbjct 51234 AACGCCGGTACCCCTCAGTGCCAGCTGTCTTCTTGCTTCCTCGTCGACATGAAGGAAGAC 51175
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| || | || || |||| ||| |||| || ||| ||||| ||| ||| |||
Sbjct 51174 TCCATTGAGGGTATCTACGACACGCTCAAGACCTGCGCCATGATCTCCAAGATGGCCGGT 51115
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| || || | || ||| || | |||| || |||| || || ||
Sbjct 51114 GGCATTGGTCTCAACGCCCACCGCATCCGTGCCACTGGCTCCTATATTGCCGGCACCAAC 51055
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
|| || | || | || || |||||||| || || || ||| || ||||| ||
Sbjct 51054 GGCACCTCGAACGGAGTCATCCCCATGCTTCGTGTCTTCAATAACACGGCTCGCTACGTC 50995
Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025
| |||| ||| ||||| || | |||| | || |||||||| ||||||
Sbjct 50994 GATCAAGGTGGTAATAAGCGTCCT---GGTGCCTTCGCCATTTACCTTGAGCCCTGGCAC 50938
Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085
|| ||| || | |||||| | || |||| ||||| || | ||||||| || |||
Sbjct 50937 GCCGATGTCTTTGAGTTCATGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG-TGC 50879
Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144
||||| || ||| || |||||||| || ||||| |||||||||||||| ||| |||
Sbjct 50878 TCGCGACCTTTTCCTTGCCCTCTGGATCCCCGATCTATTCATGAAGAGAGTCGAGAAGAA 50819
Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204
| | ||| | ||| | ||||| | || |||||||| | || | || ||
Sbjct 50818 CGCTGACTGGACCCTCATGTGTCCCAATGAGTGCCCCGGTCTGGCTGACTGCTACGGCGA 50759
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGA--GGAAG----AAAGTCGGGCGACTGCGAC 112258
|||||| || ||| | ||| |||||||| || || | |||| ||| |
Sbjct 50758 GGAGTTCGAGGCCTTGTACGAGAAGTACGAGCGGGAGGGCAAGGGTCGCAAGACCATCAA 50699
Query 112259 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318
|| |||| || | ||| | || |||||| || |||| || |||||||| | ||
Sbjct 50698 GG-CCCAGAAGC-----TTTGGTACGCAATTCTCGAGGCTCAGACTGAGACTGGCAACCC 50645
Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378
| ||||||||||| || ||| |||| ||||| || || ||||| | || ||
Sbjct 50644 TTTCATGCTTTACAAGGATGCCGCAAACCGCAAGAGCAACCAGAAGAACCTCGGCACCAT 50585
Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438
| || ||||||||||| || || ||| | || | | | |||||| |||||
Sbjct 50584 CCGCAGCTCCAACCTCTGCACTGAGATCATTGAGTACTGCGCCCCTGATGAGGTCGCTGT 50525
Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497
|| ||| | || || |||| || || | | || || | || || | | | |
Sbjct 50524 CTGCAACTTGGCTTCTCTCGCCCTTCCTACTTTCGTTGACTACAACGAGGGTGTC-TACG 50466
Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557
| | | || || || || || || | ||| ||| | |||| | ||||
Sbjct 50465 ACTTCCAGAAGCTTCATGAGGTCACTCAGGTCGTCGTTCGCAACTTGAACAAGATCATTG 50406
Query 112558 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 112614
|| || |||||||| |||| || || || || ||| | |||||||| |
Sbjct 50405 ATGTCAACCACTACCCCGTTCCTGAG---GCCCGCAATAGCAACATGCGTCACCGTCCCA 50349
Query 112615 TTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATT 112674
| ||||| |||||||| ||||| || |||| ||| | |||| |||| || |
Sbjct 50348 TCGGTCTTGGTGTCCAGGGTCTTGCCGATGCTTTCCTCGCCCTTCGCATGCCATTCGAAT 50289
Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT-- 112732
| || || || |||| | || |||||||| || || || || |||||
Sbjct 50288 CTCCTGAGGCCCGTGACCTCAACAAGAAGATCTTTGAGACCATTTACCATGCTGCTCTGA 50229
Query 112733 -TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791
| | || |||| ||||||| ||| || ||| | || || | ||||| ||||
Sbjct 50228 CTATGTCG-GTTC--AGTTGGCCAAGGAGGAAGGTACCTACTCCACGTACGAGGGCTCTC 50172
Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC---AAGCTTCACT 112848
| ||| || || | || || | || |||||| | | || || | ||| |
Sbjct 50171 CTATTTCTCAGGGCATCCTCCAGTACGACATGTGGAATGTCAAGCCCTCTGACCTT---T 50115
Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908
|| |||||| |||| ||||| | ||||||||| | ||| | || |||||||| |
Sbjct 50114 GGGATTGGGACTCTCTGAAGGAGCAGATCAAGGAGCATGGTGTCCGCAACAGTCTGCTCG 50055
Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968
| || || ||||| || |||||||| | || || ||||| || || || ||||| ||||
Sbjct 50054 TTGCTCCCATGCCTACTGCCTCCACTTCGCAGATTTTGGGCAACAACGAGTGCTTCGAAC 49995
Query 112969 CCTACACGACGAACATCTA 112987
|||| ||| | ||||| ||
Sbjct 49994 CCTATACGTCCAACATTTA 49976
>seq179
Length=397792
Score = 129 bits (142), Expect = 7e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || |||| || | || || || ||||||||||||||||||| ||| |
Sbjct 380810 TCCTTCGCCCAGCGTCTGGTTGCCTTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCG 380869
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
||| | | |||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 380870 TTCGCCTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCCAAC 380929
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||| |||||||| |||||||| || ||| || |||||
Sbjct 380930 GAGCTCATCTCTCGCGACGAGGGCCTGCACACTGACTTTGC 380970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620739909271120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |