Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq49 208 9e-49 seq290 84.2 3e-11 >seq49 Length=112291 Score = 208 bits (230), Expect = 9e-49 Identities = 1080/1696 (64%), Gaps = 63/1696 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 || || || ||||| ||||| ||||||||| |||||| || || | ||||| | Sbjct 49631 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCA-GCCAGCAAAGTGCATGCTGGT 49689 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 | |||| | || ||| || ||| | ||| | ||||| ||||| |||||||| Sbjct 49690 AATTTTGCCCATGGTAGGATCCTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAA 49749 Query 109527 TCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGT 109583 ||| || || || ||||| | | | | ||| || || ||||||||||| || Sbjct 49750 GGCACCGCGGTCGGCAGCCATCTGCACAACGGTACGCT---GGGAGATTTCCCAGACGGT 49806 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||||| | ||| | || | ||||||| |||||| || | || ||| Sbjct 49807 CTTGTACAGAGCCTTTACCTCGGCAGGAATGTTGGGGATGTTCTGGACGGA---ACCGTT 49863 Query 109644 CTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT- 109699 || | |||| | | |||||| | | ||||| | || | | |||||| | Sbjct 49864 CTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACGAGATCTTT 49923 Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759 ||||| | |||||| || || || |||||||| || || |||| |||| Sbjct 49924 CAACAGCCAGGG-GTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGT 49982 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | | ||| ||||||||||| ||||| |||||||| | || || | |||||| || || | Sbjct 49983 TGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAG 50042 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879 |||||||||| | ||| |||||||| |||| ||| | | ||| | | |||| || | Sbjct 50043 GCATGGGAGCAACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTCAGAG 50102 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 ||||||||| || | || | || ||| |||||| || || || | Sbjct 50103 AGTCCCAATCCCAAAGGTCAGAG------GGCTTGACATTCCACATGTCGTACTGGAGGA 50156 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 |||| || | |||||| |||| | | | ||| | || || ||| |||||||| Sbjct 50157 TGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACT 50216 Query 110000 ---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGA 110056 | || || | || || ||||| || || |||||||| || | || ||| Sbjct 50217 GAACCGACATAGTC---AGAGCAGCATGGTAAATGGTCTCAAAGATCTTC---TTGTTGA 50270 Query 110057 GG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGAC 110113 || || | ||| | | ||||| || | | | | || |||| || |||| Sbjct 50271 GGTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGAC 50330 Query 110114 CCTGAACACCGAGACCAATGGGGCGATGCTTCATGTT---AGAGCGTCGAGCAGTTTCTA 110170 |||| ||||| ||||| ||||| || || |||||| | ||| ||| | Sbjct 50331 CCTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCGGGCCTCAGGA---A 50387 Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230 ||||||| |||| || |||| | || | || || || |||| | Sbjct 50388 CGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCT 50447 Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACAT---ATTTGGGGAGAG 110287 |||| || || | | | ||| | | | ||| || | | || | | || || | Sbjct 50448 CATGAAGCTTCTGGAAGTCGTA-GACACC--CTCGTTGTAGTCAACGAAAGTAGGAAGGG 50504 Query 110288 CAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCG 110347 | | ||| || | ||||| |||| ||| || | || ||| || | || || | Sbjct 50505 CGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAG 50564 Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407 | || | |||||| || ||| || | ||||||||| || ||| ||| | Sbjct 50565 TGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGG 50624 Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467 ||||||| || |||||| | ||| | ||||| || ||||| | || |||||| || | || Sbjct 50625 CATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACC 50684 Query 110468 ATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524 | | | || | ||| || || |||| | | || ||| ||||||||| || Sbjct 50685 AAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCCTTGCCCTCCCGCTCGTACTTCTCGT 50741 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGA 110584 ||||| |||| || |||| ||||| |||| ||||| || | |||||| | Sbjct 50742 ACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACA 50801 Query 110585 AGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644 ||||| ||| | | || ||| || ||||||||||| || || || ||||| | | Sbjct 50802 TGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGG 50861 Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704 | ||||||||| || ||| |||| || | || ||||| ||| || |||| | Sbjct 50862 CAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGA 50921 Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---AC 110761 | || | || ||| | |||||| || || || || | |||| || || ||| | Sbjct 50922 ACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTAT 50981 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 ||| | || | || ||||| || ||| ||||||||| | ||||| || || | || Sbjct 50982 TACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTC 51041 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 | | || || || || || ||| ||| | ||||||| ||| |||| | Sbjct 51042 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGT 51101 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAA 110940 | |||||| ||||| ||| ||| || || || ||| |||| || | || Sbjct 51102 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGCGTGTCGTAG 51160 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC-G 110999 ||||| ||||| || ||| |||| || | | || ||||||||||||| ||| | || | Sbjct 51161 ATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTG-GCACTG 51219 Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATC 111057 ||| || || || ||||||||||| || | || || ||| ||| |||| ||||||| Sbjct 51220 AGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATC 51277 Query 111058 TTGTTGTATGTGTCGA 111073 |||||| || |||| Sbjct 51278 AAGTTGTAGGTCTCGA 51293 >seq290 Length=261601 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 11761 CCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACAT 11818 || ||||| || |||||||||||||| | | | || | || ||||| ||||| ||| Sbjct 140437 CCGACACCCACAAACATCTCAACGAACTCGGAACCGCTG-ACGCTGAA-AAAGGGCACAC 140494 Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878 |||||| || ||| |||| || || || |||||||| || || || | || || | Sbjct 140495 CAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTCTTACCGGTTCCTGGAGGTCCGGCCA 140554 Query 11879 GAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAG 11936 | | || ||||| |||||||| || || || || | ||||||| || |||| || Sbjct 140555 GGATAGCACCACGAGGGATCTTTGCGCCTAACCTC--TCGAAGCGCTCGGGGGTCTTCAG 140612 Query 11937 GAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| || | |||| || ||| |||||| ||| || || |||| ||| |||| Sbjct 140613 GAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCAACGTCGCTGAA 140672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973636733800