Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq49 208 9e-49
seq290 84.2 3e-11
>seq49
Length=112291
Score = 208 bits (230), Expect = 9e-49
Identities = 1080/1696 (64%), Gaps = 63/1696 (4%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466
|| || || ||||| ||||| ||||||||| |||||| || || | ||||| |
Sbjct 49631 CGCAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCA-GCCAGCAAAGTGCATGCTGGT 49689
Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526
| |||| | || ||| || ||| | ||| | ||||| ||||| ||||||||
Sbjct 49690 AATTTTGCCCATGGTAGGATCCTTCATGTGGATGTTGAGGGACTGTGACTGGTCGATGAA 49749
Query 109527 TCGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGT 109583
||| || || || ||||| | | | | ||| || || ||||||||||| ||
Sbjct 49750 GGCACCGCGGTCGGCAGCCATCTGCACAACGGTACGCT---GGGAGATTTCCCAGACGGT 49806
Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643
|||||||| | ||| | || | ||||||| |||||| || | || |||
Sbjct 49807 CTTGTACAGAGCCTTTACCTCGGCAGGAATGTTGGGGATGTTCTGGACGGA---ACCGTT 49863
Query 109644 CTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT- 109699
|| | |||| | | |||||| | | ||||| | || | | |||||| |
Sbjct 49864 CTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAAGCCCATGTCGACGAGATCTTT 49923
Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759
||||| | |||||| || || || |||||||| || || |||| ||||
Sbjct 49924 CAACAGCCAGGG-GTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGT 49982
Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819
| | ||| ||||||||||| ||||| |||||||| | || || | |||||| || || |
Sbjct 49983 TGGACGTATAGGGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAG 50042
Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879
|||||||||| | ||| |||||||| |||| ||| | | ||| | | |||| || |
Sbjct 50043 GCATGGGAGCAACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTGCTCCTTCAGAG 50102
Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939
||||||||| || | || | || ||| |||||| || || || |
Sbjct 50103 AGTCCCAATCCCAAAGGTCAGAG------GGCTTGACATTCCACATGTCGTACTGGAGGA 50156
Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999
|||| || | |||||| |||| | | | ||| | || || ||| ||||||||
Sbjct 50157 TGCCCTGAGAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACT 50216
Query 110000 ---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGA 110056
| || || | || || ||||| || || |||||||| || | || |||
Sbjct 50217 GAACCGACATAGTC---AGAGCAGCATGGTAAATGGTCTCAAAGATCTTC---TTGTTGA 50270
Query 110057 GG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGAC 110113
|| || | ||| | | ||||| || | | | | || |||| || ||||
Sbjct 50271 GGTCACGGGCCTCAGGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGAC 50330
Query 110114 CCTGAACACCGAGACCAATGGGGCGATGCTTCATGTT---AGAGCGTCGAGCAGTTTCTA 110170
|||| ||||| ||||| ||||| || || |||||| | ||| ||| |
Sbjct 50331 CCTGGACACCAAGACCGATGGGACGGTGACGCATGTTGCTATTGCGGGCCTCAGGA---A 50387
Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230
||||||| |||| || |||| | || | || || || |||| |
Sbjct 50388 CGGGGTAGTGGTTGACATCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCT 50447
Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACAT---ATTTGGGGAGAG 110287
|||| || || | | | ||| | | | ||| || | | || | | || || |
Sbjct 50448 CATGAAGCTTCTGGAAGTCGTA-GACACC--CTCGTTGTAGTCAACGAAAGTAGGAAGGG 50504
Query 110288 CAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCG 110347
| | ||| || | ||||| |||| ||| || | || ||| || | || || |
Sbjct 50505 CGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAG 50564
Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407
| || | |||||| || ||| || | ||||||||| || ||| ||| |
Sbjct 50565 TGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGG 50624
Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467
||||||| || |||||| | ||| | ||||| || ||||| | || |||||| || | ||
Sbjct 50625 CATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACC 50684
Query 110468 ATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524
| | | || | ||| || || |||| | | || ||| ||||||||| ||
Sbjct 50685 AAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCCTTGCCCTCCCGCTCGTACTTCTCGT 50741
Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGA 110584
||||| |||| || |||| ||||| |||| ||||| || | |||||| |
Sbjct 50742 ACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACA 50801
Query 110585 AGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCG 110644
||||| ||| | | || ||| || ||||||||||| || || || ||||| | |
Sbjct 50802 TGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGG 50861
Query 110645 CCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAA 110704
| ||||||||| || ||| |||| || | || ||||| ||| || |||| |
Sbjct 50862 CAAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGA 50921
Query 110705 AGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---AC 110761
| || | || ||| | |||||| || || || || | |||| || || ||| |
Sbjct 50922 ACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTAT 50981
Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821
||| | || | || ||||| || ||| ||||||||| | ||||| || || | ||
Sbjct 50982 TACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTC 51041
Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881
| | || || || || || ||| ||| | ||||||| ||| |||| |
Sbjct 51042 CGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGT 51101
Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAA 110940
| |||||| ||||| ||| ||| || || || ||| |||| || | ||
Sbjct 51102 TGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCT-TGAGCGTGTCGTAG 51160
Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC-G 110999
||||| ||||| || ||| |||| || | | || ||||||||||||| ||| | || |
Sbjct 51161 ATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTG-GCACTG 51219
Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATC 111057
||| || || || ||||||||||| || | || || ||| ||| |||| |||||||
Sbjct 51220 AGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAACTTGCTGGACATC 51277
Query 111058 TTGTTGTATGTGTCGA 111073
|||||| || ||||
Sbjct 51278 AAGTTGTAGGTCTCGA 51293
>seq290
Length=261601
Score = 84.2 bits (92), Expect = 3e-11
Identities = 166/240 (69%), Gaps = 8/240 (3%)
Strand=Plus/Plus
Query 11761 CCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACAT 11818
|| ||||| || |||||||||||||| | | | || | || ||||| ||||| |||
Sbjct 140437 CCGACACCCACAAACATCTCAACGAACTCGGAACCGCTG-ACGCTGAA-AAAGGGCACAC 140494
Query 11819 TAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGA 11878
|||||| || ||| |||| || || || |||||||| || || || | || || |
Sbjct 140495 CAGACTCGCCGGCGGTGGCCTTGGCAAGCAGGGTCTTACCGGTTCCTGGAGGTCCGGCCA 140554
Query 11879 GAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAG 11936
| | || ||||| |||||||| || || || || | ||||||| || |||| ||
Sbjct 140555 GGATAGCACCACGAGGGATCTTTGCGCCTAACCTC--TCGAAGCGCTCGGGGGTCTTCAG 140612
Query 11937 GAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996
|||| || | |||| || ||| |||||| ||| || || |||| ||| ||||
Sbjct 140613 GAAGCTGACGAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCAACGTCGCTGAA 140672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588973636733800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |