Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq49 185 1e-41 seq179 102 1e-16 >seq49 Length=112291 Score = 185 bits (204), Expect = 1e-41 Identities = 615/938 (66%), Gaps = 33/938 (4%) Strand=Plus/Plus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 |||||||||| || ||||| ||||| ||||| |||||| | |||||| | Sbjct 50498 GGAAGGGCGAGAGAAGCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATG 50557 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || || | |||||| || || || || | ||||| ||||| ||||| | Sbjct 50558 ATCTCAGTGCAGAGGTTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 50617 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 || ||||||||||| |||||| | || | || ||||| ||||| | || ||||||| Sbjct 50618 TTTGCGGCATCCTTGTAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATT 50677 Query 106637 GCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTA 106692 || | ||| | | || | | || | |||| ||| | || | |||||| |||||| Sbjct 50678 GCGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCCCGCTCGTA 50733 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTC 106752 ||| ||| | ||| || |||||||| || ||| | ||||| || || | Sbjct 50734 CTTCTCGTACAAGGCCTCGAACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATT 50793 Query 106753 TGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAAT 106812 ||||| | || | ||| | | | || ||| || | ||||||||| || || || || Sbjct 50794 GGGACACATGAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGAT 50853 Query 106813 CCACAGGG-ATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 106870 ||| |||| | | ||| || || | | ||| || |||| || | || ||||| || Sbjct 50854 CCAGAGGGCAAGGAAA-AGGTCGCGAGCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGC 50911 Query 106871 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCC 106930 | || | |||||| | || ||| |||||||| |||||||| || | |||| | || Sbjct 50912 AGATCCATGAACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACC- 50970 Query 106931 TTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 106984 ||||| ||| |||||| || ||||| || ||| || || || |||||| Sbjct 50971 --AGGACGCTTATTACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGC 51028 Query 106985 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 107044 || || || | || | || || || || || |||| || | |||| | Sbjct 51029 ATGGGGATGACTCCGTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGG 51088 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | ||| || | ||||| || || ||| ||| ||||| || || | | Sbjct 51089 ATGCGGTGGGCGTTGAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTG 51148 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | |||||||| | || ||||| ||||| || ||| ||||||||| ||| Sbjct 51149 AGCGTGTCGTAGATACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGAC 51208 Query 107165 ATCTGCGGTCT-TGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 107223 | ||| | || || ||||| || |||||||| || || | ||||| ||| | | | Sbjct 51209 AGCTG-GCACTGAGGGGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGA--AGAAC 51265 Query 107224 TTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 ||| ||||||| || ||| ||||| | ||| |||| || || || ||||||| Sbjct 51266 TTGCTGGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCG 51325 Query 107282 ATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA 107341 | || |||||||| | ||||| || ||| | || | |||| |||||| |||| Sbjct 51326 ACTGCAACACGCATGATCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGC--TTGA 51383 Query 107342 --AGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 || || | || |||| ||||| |||| || ||||| Sbjct 51384 GTAGGTATGATC-TCTCCAGGGTCTTGAAGCCGAAGTA 51420 >seq179 Length=397792 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| || ||||| || || || || || || || |||||| || || Sbjct 380971 GGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 380912 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| |||| | | ||| | ||| ||||||||| Sbjct 380911 AGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGAT 380852 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAA 117451 |||||| ||| || || |||| || |||| ||||||||| ||| | || | | Sbjct 380851 ACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGA-TGAGCTCTCGTCGCTGA 380793 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTT 117479 |||||||| ||||| | |||||||| Sbjct 380792 TCCATTTCAAGGCCCAGTCGGCCTTCTT 380765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978432702040