Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6 152 1e-31
seq57 125 2e-23
>seq6
Length=179136
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || || ||||| || ||||| || ||||| | || || | ||||| |||
Sbjct 30822 ACGAGATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCG 30763
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | || || ||||| ||||| ||||| || ||||||||
Sbjct 30762 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 30703
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || ||||||||||| ||| ||| || || || |||| ||||||
Sbjct 30702 ATCTTCGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTG 30643
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||||| ||| || ||||| | ||||||
Sbjct 30642 CCTGTCAGAGTCTTGACGAAGATTTGCAT 30614
Score = 150 bits (166), Expect = 4e-31
Identities = 145/186 (78%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || ||||| || ||||||||||| |||| ||| |||| || || ||
Sbjct 30311 AACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTC 30252
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || ||||||||||| || ||||||||||| || |||||||| ||||| ||
Sbjct 30251 AAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCCTG 30192
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||||||||| ||||| || || || ||| || ||||| || | |||||
Sbjct 30191 AATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTT 30132
Query 195111 TCCTGT 195116
|| ||
Sbjct 30131 GCCGGT 30126
Score = 129 bits (142), Expect = 1e-24
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCG-GCAAGAGTTCTCCCATCTTC 194990
||||||||||| || || || || ||||| ||||||||| |||| || | || |||||
Sbjct 31050 ACAAGGTGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAG-GTGCGGCCGTCTTC 30992
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||||| || ||||| || || || || ||||| || || ||||| || ||||| ||
Sbjct 30991 CAATTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTG 30932
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| ||||| ||||| ||| || ||||| | || | |||||
Sbjct 30931 AATCTTGGACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTT 30872
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| ||||| || || ||||| | |||||
Sbjct 30871 TCCGGTCAATGTCTTGACGAAGATCTGCAT 30842
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||| || || ||||| || ||||| ||||| |||| ||||| | || || ||
Sbjct 30595 AACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGACCGTCCTC 30536
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| ||||| || ||||||||||| || || ||||| || |||||||| || ||||| ||
Sbjct 30535 AAGTTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTG 30476
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| || || || ||||| || ||| || || |||||||| | |||||
Sbjct 30475 AATCTTCGACTTCACATTGTCGATGGTATCAGAAGACTCAACCTCAAGGGTGATGGTCTT 30416
Query 195111 TCCTGTCAAAGTTTTTACGA 195130
|| || | || || ||||
Sbjct 30415 GCCGGTGAGGGTCTTGACGA 30396
>seq57
Length=484889
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | || || | || || |||
Sbjct 315907 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCGTCCTCG 315848
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || || || ||
Sbjct 315847 AGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 315788
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| || ||||| |||||||| | |||||
Sbjct 315787 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 315728
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
|| |||| || || ||||| | ||||| || ||||||
Sbjct 315727 CCCGTCAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 315686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109477036910207
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