Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq6 105 5e-18
>seq6
Length=179136
Score = 105 bits (116), Expect = 5e-18
Identities = 135/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| || ||||||||||| || || || |||||||| |||| | |||| | | || ||
Sbjct 30311 AACCAAGTGAAGGGTAGACTCCTTCTGAATATTGTAGTCGGAAAGGGTTCGGCCGTCCTC 30252
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| ||||| || || || || | ||||||||| || || || |||||||| || || ||
Sbjct 30251 AAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGGTCTGGGGGGATGCCTTCCTTGTCCTG 30192
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||| || || || | || | ||| || || | ||| || |||||||||| || ||
Sbjct 30191 AATCTTGGACTTGACGTTGTCAATAGTATCGGAGGATTCGACCTCAAGAGTGATGGTCTT 30132
Query 101440 GCCGGT 101445
||||||
Sbjct 30131 GCCGGT 30126
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| |||||||| || || || || || ||||| | | || | |||| || | ||
Sbjct 30817 ATGCAGGGTAGACTCCTTCTGAATGTTATAATCCGACAGGGTGCGACCATCCTCGAGCTG 30758
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| ||||||||||| || ||||| || ||||| || || ||||| || ||
Sbjct 30757 CTTTCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGGATCTT 30698
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | ||||| || | ||| || || || || | ||| ||||| ||
Sbjct 30697 CGACTTGACATTGTCAATGGTGTCTGAAGATTCGACCTCGAGCGTAATCGTCTTGCCTGT 30638
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||| || || || || |||||
Sbjct 30637 CAGAGTCTTGACGAAGATTTGCAT 30614
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| |||||||| || || || ||||||||| | || | | | || |||||||||
Sbjct 31044 TGAAGCGTAGATTCCTTCTGAATGTTGTAATCGCTCAAGGTGCGGCCGTCTTCCAATTGC 30985
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || || || | |||||| || || || || ||||| || || || ||||| ||
Sbjct 30984 TTGCCAGCGAAAATGAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCCTGAATCTTG 30925
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | ||||| || | || ||||| | |||| || || |||||
Sbjct 30924 GACTTCACGTTGTCAATCGTGTCGGAAGACTCGACTTCTAACGTGATTGTCTTTCCGGTC 30865
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
|| || || || || ||||||||
Sbjct 30864 AATGTCTTGACGAAGATCTGCAT 30842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396276849684597
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |