Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq49 307 2e-78 seq179 156 8e-33 >seq49 Length=112291 Score = 307 bits (340), Expect = 2e-78 Identities = 818/1233 (66%), Gaps = 39/1233 (3%) Strand=Plus/Plus Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966 |||||||| | ||||| || || | || || | | |||||||| ||| || || ||| Sbjct 49934 GGGTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAG 49993 Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026 || |||| || ||||||||| |||| |||||| | |||| ||| || ||||||||||| Sbjct 49994 GGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCA 50053 Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086 || || |||||||| | || || ||||| ||| | | || || | ||||| Sbjct 50054 ACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTG-CTCCT----TCAGAG-AGTCC 50107 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || | ||| | |||| | ||| || ||||||||||| |||| | |||||| | Sbjct 50108 CAA-TCCCAAA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGA 50164 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 | || ||||| ||| | |||||||| || | ||||||||||| || ||| Sbjct 50165 GAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACTGAACCGAC 50224 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266 ||| ||||| | ||| ||||| ||||| |||| | ||||||| | |||||| Sbjct 50225 ATAGTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCA 50284 Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326 || || ||| ||||| | | |||| |||| || || |||||||| || | Sbjct 50285 GGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGA 50344 Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386 |||||||| | ||| | || ||| ||| | ||| | |||||| |||| Sbjct 50345 CCGATGGGACGGTGACGCATGTTGCTATTGCGGGCCTCAGGAACGGGGTAGTGGTTGACA 50404 Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA-CTCGTG 213445 || ||||||||||| | |||||| | | || | ||||| | || | | || || Sbjct 50405 TCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCT----CATGAAGCTTCTG 50460 Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499 ||| ||||| | || || | || || ||| ||||||| |||| Sbjct 50461 ---GAAGTCGTAGACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAA 50517 Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559 |||||| || || ||||| | || | | |||||| |||||||| ||||| |||||| Sbjct 50518 GTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGA 50577 Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619 || ||||||||||| ||||||| ||||| ||| ||| || | ||||||||| || Sbjct 50578 GCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAG 50637 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679 |||| | ||| || ||||| ||| | | | || || | ||| || | | ||| Sbjct 50638 CATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGC 50697 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGA 213738 ||||| | || | | | | | | | |||||||| ||||| | | | || Sbjct 50698 CTTGATG----GTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGA 50753 Query 213739 ATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAG 213797 | || | ||| || | | | |||| || || || ||||||||||||| ||||| Sbjct 50754 ACTCCTCGCCGTAGCAGTCAG-CCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAG 50812 Query 213798 TCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAG 213856 || ||| | |||| |||||||| |||||| || || |||| ||| || || ||| || Sbjct 50813 TCAGCGTTCTTCTC-GACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAG 50871 Query 213857 GTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGAT 213916 ||| | | | ||| ||| || ||| ||||||||||| | || ||||||| Sbjct 50872 GTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTCAAAGAC 50931 Query 213917 GTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTG 213973 || |||||||| ||||| | ||| ||||| ||||| || | || | || || || || Sbjct 50932 ATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTG 50991 Query 213974 GTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG 214033 || || | ||| | ||||||| || || | ||| | | ||||| || Sbjct 50992 ATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGT 51051 Query 214034 TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCT 214091 |||||||| || || ||||| ||||| | ||| | | | || | | |||| || Sbjct 51052 GCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGA--CCA 51109 Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 ||||||||||| ||||||||||||||||||| Sbjct 51110 ATGCCACCGGCCATCTTGGAGATCATGGCGCAG 51142 >seq179 Length=397792 Score = 156 bits (172), Expect = 8e-33 Identities = 343/508 (68%), Gaps = 17/508 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | || |||||||| Sbjct 381262 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTC 381203 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 |||||| ||||||||||| | || || ||| |||| ||| | ||| | Sbjct 381202 CATGAAATCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAAGA 381144 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || || ||| |||| ||||| | ||| | | || ||||||||| | ||| | Sbjct 381143 GACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAG 381084 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||| ||||| || | ||||||| ||| |||| || || || | | || | Sbjct 381083 CGCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGT 381024 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131 || || || ||| |||||| | |||||||| | |||| | || Sbjct 381023 CCTCAATA----AC-CTGC----TTGTTGGGGCGGTGCTTGAGGTGAGAGTACAATAGGC 380973 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||||||||| |||||| ||| ||||| || ||||||| ||||||||||| |||| Sbjct 380972 AGGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGAC 380913 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||||||||| || | || |||||||||||||| | ||||| | || |||||||| Sbjct 380912 CAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGA 380853 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || ||||| || || | || |||| || | | ||| ||| || Sbjct 380852 TACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCTCGTCGCTGA 380793 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339 |||| | |||||||| |||||||| Sbjct 380792 TCCATTTCAAGGCCCAGTCGGCCTTCTT 380765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529062224640