Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq49 307 2e-78
seq179 156 8e-33
>seq49
Length=112291
Score = 307 bits (340), Expect = 2e-78
Identities = 818/1233 (66%), Gaps = 39/1233 (3%)
Strand=Plus/Plus
Query 212907 GGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAG 212966
|||||||| | ||||| || || | || || | | |||||||| ||| || || |||
Sbjct 49934 GGGTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAG 49993
Query 212967 GGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCC 213026
|| |||| || ||||||||| |||| |||||| | |||| ||| || |||||||||||
Sbjct 49994 GGTTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCA 50053
Query 213027 ACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCC 213086
|| || |||||||| | || || ||||| ||| | | || || | |||||
Sbjct 50054 ACGAGCAGACTGTTGCGGACACCATGCTCCTTGATCTG-CTCCT----TCAGAG-AGTCC 50107
Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146
|| | ||| | |||| | ||| || ||||||||||| |||| | |||||| |
Sbjct 50108 CAA-TCCCAAA--GGTCAGAGGGCTTGACATTCCACATGTCGTACTGGAGGATGCCCTGA 50164
Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206
| || ||||| ||| | |||||||| || | ||||||||||| || |||
Sbjct 50165 GAAATAGGAGAGCCCTCGTACGTGGAGTAGGTACCTTCCTCCTTGGCCAACTGAACCGAC 50224
Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCT 213266
||| ||||| | ||| ||||| ||||| |||| | ||||||| | ||||||
Sbjct 50225 ATAGTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACGGGCCTCA 50284
Query 213267 GGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATG 213326
|| || ||| ||||| | | |||| |||| || || |||||||| || |
Sbjct 50285 GGAGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGA 50344
Query 213327 CCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAG 213386
|||||||| | ||| | || ||| ||| | ||| | |||||| ||||
Sbjct 50345 CCGATGGGACGGTGACGCATGTTGCTATTGCGGGCCTCAGGAACGGGGTAGTGGTTGACA 50404
Query 213387 TCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA-CTCGTG 213445
|| ||||||||||| | |||||| | | || | ||||| | || | | || ||
Sbjct 50405 TCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCT----CATGAAGCTTCTG 50460
Query 213446 ATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTGGCCAG 213499
||| ||||| | || || | || || ||| ||||||| ||||
Sbjct 50461 ---GAAGTCGTAGACACCCTCGTTGTAGTCAACGAAAGTAGGAAGGGCGAGAGAAGCCAA 50517
Query 213500 GTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCT 213559
|||||| || || ||||| | || | | |||||| |||||||| ||||| ||||||
Sbjct 50518 GTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGGTTGGA 50577
Query 213560 GCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAG 213619
|| ||||||||||| ||||||| ||||| ||| ||| || | ||||||||| ||
Sbjct 50578 GCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTGTAAAG 50637
Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGC 213679
|||| | ||| || ||||| ||| | | | || || | ||| || | | |||
Sbjct 50638 CATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCTTCTGGGC 50697
Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGA 213738
||||| | || | | | | | | | |||||||| ||||| | | | ||
Sbjct 50698 CTTGATG----GTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTCGA 50753
Query 213739 ATTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAG 213797
| || | ||| || | | | |||| || || || ||||||||||||| |||||
Sbjct 50754 ACTCCTCGCCGTAGCAGTCAG-CCAGACCGGGGCACTCATTGGGACACATGAGGGTCCAG 50812
Query 213798 TCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAG 213856
|| ||| | |||| |||||||| |||||| || || |||| ||| || || ||| ||
Sbjct 50813 TCAGCGTTCTTCTC-GACTCTCTTCATGAATAGATCGGGGATCCAGAGGGCAAGGAAAAG 50871
Query 213857 GTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGAT 213916
||| | | | ||| ||| || ||| ||||||||||| | || |||||||
Sbjct 50872 GTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAACTCAAAGAC 50931
Query 213917 GTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTG 213973
|| |||||||| ||||| | ||| ||||| ||||| || | || | || || || ||
Sbjct 50932 ATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATTACCACCTTG 50991
Query 213974 GTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTG 214033
|| || | ||| | ||||||| || || | ||| | | ||||| ||
Sbjct 50992 ATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCCGTTCGAGGT 51051
Query 214034 TCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA--GGTTGCTCATGGAGAGCCCT 214091
|||||||| || || ||||| ||||| | ||| | | | || | | |||| ||
Sbjct 51052 GCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTTGAGA--CCA 51109
Query 214092 ATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124
||||||||||| |||||||||||||||||||
Sbjct 51110 ATGCCACCGGCCATCTTGGAGATCATGGCGCAG 51142
>seq179
Length=397792
Score = 156 bits (172), Expect = 8e-33
Identities = 343/508 (68%), Gaps = 17/508 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| | || | ||||| |||||||| ||||| || | | || ||||||||
Sbjct 381262 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTTCCGCCGAGGGAAATGTTCTC 381203
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957
|||||| ||||||||||| | || || ||| |||| ||| | ||| |
Sbjct 381202 CATGAAATCGAAGGGGTTGGAAGACTTGTAGACCT-TGTCGTTGCCAAGAGCGACCAAGA 381144
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
| | || || ||| |||| ||||| | ||| | | || ||||||||| | ||| |
Sbjct 381143 GACGGTCAGCAACGAACTCAATGTACTGCTTCATCAAGTTGGAGTTCATGCCGAGGAGAG 381084
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
|||| ||||| || | ||||||| ||| |||| || || || | | || |
Sbjct 381083 CGCAAGGCAGAGCCTCAGTCAAGAACTCCTGCTCAATCTTGACCGCATCGACAATGATGT 381024
Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCAT-AGAGCAT-----GC 48131
|| || || ||| |||||| | |||||||| | |||| | ||
Sbjct 381023 CCTCAATA----AC-CTGC----TTGTTGGGGCGGTGCTTGAGGTGAGAGTACAATAGGC 380973
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
|||||||||| |||||| ||| ||||| || ||||||| ||||||||||| ||||
Sbjct 380972 AGGCAAAGTCAGTGTGCAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTCAGAC 380913
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
||||||||| || | || |||||||||||||| | ||||| | || ||||||||
Sbjct 380912 CAGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAGGCGAACGCACCGCTGAAGAAGA 380853
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
| ||||| || || ||||| || || | || |||| || | | ||| ||| ||
Sbjct 380852 TACCCTCAACAGCGGCGAAGGCAACCAGACGCTGGGCGAAGGATGAGCTCTCGTCGCTGA 380793
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTT 48339
|||| | |||||||| ||||||||
Sbjct 380792 TCCATTTCAAGGCCCAGTCGGCCTTCTT 380765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931529062224640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |