Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016
-10-21] 321 sequences; 48,556,462 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq49 295 1e-74
seq179 149 1e-30
>seq49
Length=112291
Score = 295 bits (326), Expect = 1e-74
Identities = 836/1275 (66%), Gaps = 41/1275 (3%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475
||||| ||||| ||||| ||||||||||||||| |||||||||| || | |||||| ||
Sbjct 50228 GTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACG-GGCCTCAGG 50286
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||| ||||| || || | || | ||||| || ||||| || || | |||
Sbjct 50287 AGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACC 50346
Query 221536 GATGGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593
|||||| | ||| | | ||||| | |||| || || || ||||| || ||||||
Sbjct 50347 GATGGGACGGTGACGCATGTTGCTATTGCGG--GCCTCAGGAACGGGGTAGTGGTTGACA 50404
Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653
|| || | ||||| | ||| || || ||| | | ||||| |||||||||
Sbjct 50405 TCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAG 50464
Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713
| | | || |||| || || || || |||| ||||| |
Sbjct 50465 TCGTAGACACCCTCGT--------TGTAG----TCAACGAAAGTAGGAAGGGCGAGAGAA 50512
Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773
|||| ||| || || || ||||| || | | |||| |||||||| || ||||||
Sbjct 50513 GCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGG 50572
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
||| || |||||| || |||| || || || |||||| || || || ||||||
Sbjct 50573 TTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTG 50632
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893
|| ||||| || || ||||||||| ||||||| | ||||| || ||| || | |
Sbjct 50633 TAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCT-T 50691
Query 221894 CTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATA 221946
|||| || | ||| | |||| | | | |||| ||| || ||| || |
Sbjct 50692 CTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTC 50751
Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006
|| ||| || ||||| || |||| || || ||| |||||||||
Sbjct 50752 GA---------ACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACAT 50802
Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066
|| |||||| ||| | | ||| |||| |||||| || || |||||||| || ||
Sbjct 50803 GAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGGC 50862
Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126
| || || || | | || ||||||| ||||| ||| || | |||||||| ||
Sbjct 50863 AAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAA 50922
Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186
|||||| | || |||||||| ||||| || || | ||| | || || || ||||| ||
Sbjct 50923 CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATT 50982
Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246
||||| ||||| || | || ||||||| ||||| | || | | |||
Sbjct 50983 ACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCC 51042
Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306
||| || ||||||||||| ||| || | || ||| | | | |||
Sbjct 51043 GTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTT 51102
Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366
| || || |||||||| || ||||||||||||||| ||||||| ||||| |||
Sbjct 51103 GAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGAT 51162
Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426
||||| || ||||| ||||| | || | || || ||||| |||| ||| | | |
Sbjct 51163 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGG 51222
Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486
|| || |||||| || || |||||| |||||| || ||| | || ||||||| |
Sbjct 51223 GGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTT 51282
Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCATGT 222545
||| ||||| | ||| | | | |||||| ||| || | | || || | ||||
Sbjct 51283 GTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACA-CGCATGA 51341
Query 222546 ACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTC 222603
||||| ||| || ||||| || || | ||||| ||| ||||| ||| | ||
Sbjct 51342 TCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCT--TGAGTAGGTATGATCTCTC 51399
Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663
||| |||||||| || ||||| | | || ||||| | | ||| || | ||| | |||
Sbjct 51400 CAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTC 51459
Query 222664 CAGCTCCGACTTGTG 222678
||||| ||||||
Sbjct 51460 GAGCTCTTCCTTGTG 51474
Score = 100 bits (110), Expect = 5e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || |||||||| ||||| | || || | | |||||| | ||| || || | ||
Sbjct 49936 GTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGG 49995
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
||||| || |||||||||||||| ||||| | ||| ||| || |||||||| || ||
Sbjct 49996 TTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 50055
Query 221236 CAGCAGACTGTTGCG 221250
||||||||||||||
Sbjct 50056 GAGCAGACTGTTGCG 50070
>seq179
Length=397792
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893
|||||| |||| ||||||| | | ||||| | | || | | |||| ||||| |||||
Sbjct 380777 TGGGCCTTGAAATGGATCAGCGACGAGAGCTCATCCTTCGCCCAGCGTCTGGTTGCCTTC 380836
Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953
|| ||||| ||||| ||||| ||||||||| |||| || |||| |||||||||||| ||
Sbjct 380837 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAG 380896
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| |||||| || ||| ||| ||||||||||||||| | |||||||| ||
Sbjct 380897 CGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTG 380956
Query 26014 CACAGAGATTTTGCCTGCCT 26033
|||| || |||||||||||
Sbjct 380957 CACACTGACTTTGCCTGCCT 380976
Score = 86.0 bits (94), Expect = 1e-11
Identities = 175/258 (68%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| |||||||||||||||| | ||| |||||||||||| ||||||||||||
Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426
Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593
||||||| | ||| |||| || | ||| | | || ||| || | || ||
Sbjct 380427 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCC 380486
Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653
|| | | || ||||| || || || || || || || || ||||| || ||| |
Sbjct 380487 CACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGAGCGC 380546
Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713
|||| | | || || ||| ||||| || ||||||||||||||||| ||
Sbjct 380547 TTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 380606
Query 25714 GAAAATGTGCACTCTGAG 25731
|| || | |||||||||
Sbjct 380607 GAGAACATTCACTCTGAG 380624
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928841073010240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |