Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20orchidophilum_20[genbank_20GCA_5F001831195.1_202016 -10-21] 321 sequences; 48,556,462 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq49 295 1e-74 seq179 149 1e-30 >seq49 Length=112291 Score = 295 bits (326), Expect = 1e-74 Identities = 836/1275 (66%), Gaps = 41/1275 (3%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAG-TCTCTTGGCCTCGGG 221475 ||||| ||||| ||||| ||||||||||||||| |||||||||| || | |||||| || Sbjct 50228 GTCAGAGCAGCATGGTAAATGGTCTCAAAGATCTTCTTGTTGAGGTCACG-GGCCTCAGG 50286 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | || | ||||| || ||||| || || | ||| Sbjct 50287 AGATTCGAATGGCATGCGAAGGGCGAGGAAAGCATCGGCAAGACCCTGGACACCAAGACC 50346 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 |||||| | ||| | | ||||| | |||| || || || ||||| || |||||| Sbjct 50347 GATGGGACGGTGACGCATGTTGCTATTGCGG--GCCTCAGGAACGGGGTAGTGGTTGACA 50404 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||| | ||| || || ||| | | ||||| ||||||||| Sbjct 50405 TCAATGATCTTGTTCAAGTTGCGAACGACGACCTGAGTGACCTCATGAAGCTTCTGGAAG 50464 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 | | | || |||| || || || || |||| ||||| | Sbjct 50465 TCGTAGACACCCTCGT--------TGTAG----TCAACGAAAGTAGGAAGGGCGAGAGAA 50512 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||| ||| || || || ||||| || | | |||| |||||||| || |||||| Sbjct 50513 GCCAAGTTGCAGACAGCGACCTCATCAGGGGCGCAGTACTCAATGATCTCAGTGCAGAGG 50572 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| || |||| || || || |||||| || || || |||||| Sbjct 50573 TTGGAGCTGCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGGCATCCTTG 50632 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| || || ||||||||| ||||||| | ||||| || ||| || | | Sbjct 50633 TAAAGCATGAAAGGGTTGCCAGTCTCAGTCTGAGCCTCGAGAATTGCGTACCAAAGCT-T 50691 Query 221894 CTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATA 221946 |||| || | ||| | |||| | | | |||| ||| || ||| || | Sbjct 50692 CTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCCCGCTCGTACTTCTCGTACAAGGCCTC 50751 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 || ||| || ||||| || |||| || || ||| ||||||||| Sbjct 50752 GA---------ACTCCTCGCCGTAGCAGTCAGCCAGACCGGGGCACTCATTGGGACACAT 50802 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 || |||||| ||| | | ||| |||| |||||| || || |||||||| || || Sbjct 50803 GAGGGTCCAGTCAGCGTTCTTCTCGACTCTCTTCATGAATAGATCGGGGATCCAGAGGGC 50862 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | || || || | | || ||||||| ||||| ||| || | |||||||| || Sbjct 50863 AAGGAAAAGGTCGCGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCATGAA 50922 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 |||||| | || |||||||| ||||| || || | ||| | || || || ||||| || Sbjct 50923 CTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAATGGCGAAGGCACCAGGACGCTTATT 50982 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 ||||| ||||| || | || ||||||| ||||| | || | | ||| Sbjct 50983 ACCACCTTGATCGACGTAGCGAGCCGTGTTATTGAAGACACGAAGCATGGGGATGACTCC 51042 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||| || ||||||||||| ||| || | || ||| | | | ||| Sbjct 51043 GTTCGAGGTGCCGTTGGTGCCGGCAATATAGGAGCCAGTGGCACGGATGCGGTGGGCGTT 51102 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 | || || |||||||| || ||||||||||||||| ||||||| ||||| ||| Sbjct 51103 GAGACCAATGCCACCGGCCATCTTGGAGATCATGGCGCAGGTCTTGAGCGTGTCGTAGAT 51162 Query 222367 GCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGT 222426 ||||| || ||||| ||||| | || | || || ||||| |||| ||| | | | Sbjct 51163 ACCCTCAATGGAGTCTTCCTTCATGTCGACGAGGAAGCAAGAAGACAGCTGGCACTGAGG 51222 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 || || |||||| || || |||||| |||||| || ||| | || ||||||| | Sbjct 51223 GGTACCGGCGTTGAAGAGTGTGGGAGAGGCGTGGGTGAAGAACTTGCTGGACATCAAGTT 51282 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCATGT 222545 ||| ||||| | ||| | | | |||||| ||| || | | || || | |||| Sbjct 51283 GTAGGTCTCGATGACGCGCTCAACGTTGTCACCCCAGATGCCGACTGCAACA-CGCATGA 51341 Query 222546 ACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTC 222603 ||||| ||| || ||||| || || | ||||| ||| ||||| ||| | || Sbjct 51342 TCATGTGCTGCGGTCTCTCGGCAATCTTGCCGTCGAGCT--TGAGTAGGTATGATCTCTC 51399 Query 222604 CAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTC 222663 ||| |||||||| || ||||| | | || ||||| | | ||| || | ||| | ||| Sbjct 51400 CAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAGACAATGGCAGAGTC 51459 Query 222664 CAGCTCCGACTTGTG 222678 ||||| |||||| Sbjct 51460 GAGCTCTTCCTTGTG 51474 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || |||||||| ||||| | || || | | |||||| | ||| || || | || Sbjct 49936 GTTGACGACTTGGAACTCTCCAGCAAGAACACGACGCTGGTAAATGTTGGACGTATAGGG 49995 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 ||||| || |||||||||||||| ||||| | ||| ||| || |||||||| || || Sbjct 49996 TTCGAAGCACTCGTTGTTGCCCAAAATCTGCGAAGTGGAGGCAGTAGGCATGGGAGCAAC 50055 Query 221236 CAGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 50056 GAGCAGACTGTTGCG 50070 >seq179 Length=397792 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 |||||| |||| ||||||| | | ||||| | | || | | |||| ||||| ||||| Sbjct 380777 TGGGCCTTGAAATGGATCAGCGACGAGAGCTCATCCTTCGCCCAGCGTCTGGTTGCCTTC 380836 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || ||||| ||||| ||||| ||||||||| |||| || |||| |||||||||||| || Sbjct 380837 GCCGCTGTTGAGGGTATCTTCTTCAGCGGTGCGTTCGCCTCCATTTTCTGGCTCAAGAAG 380896 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| || ||| ||| ||||||||||||||| | |||||||| || Sbjct 380897 CGTGGTCTCATGCCTGGTCTGACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTG 380956 Query 26014 CACAGAGATTTTGCCTGCCT 26033 |||| || ||||||||||| Sbjct 380957 CACACTGACTTTGCCTGCCT 380976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/258 (68%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||||||||| |||||||||||| Sbjct 380367 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGATCTG 380426 Query 25537 GCCAAGGACATGGACGGCTGGTAC-GCTCTATC--CAAAGACGAGCAGCATTTTCTCAAG 25593 ||||||| | ||| |||| || | ||| | | || ||| || | || || Sbjct 380427 TCCAAGGATCTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCC 380486 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || || || || || || || || ||||| || ||| | Sbjct 380487 CACATCCTCGCCTTCTTCGCCGCATCCGACGGCATCGTCAATGAGAACCTCGTTGAGCGC 380546 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | | || || ||| ||||| || ||||||||||||||||| || Sbjct 380547 TTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGATG 380606 Query 25714 GAAAATGTGCACTCTGAG 25731 || || | ||||||||| Sbjct 380607 GAGAACATTCACTCTGAG 380624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841073010240